Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00691 ATGTCGAGCTACTCCGACTCCGACGATGATTCGGTACCTCGTTCGAAGCTCTTCGGTCGCCGCCGCCCCGTTTATGATATTTTTGGAGGAGGAAGAGTTGCAGACATACTGTTATGGAAAGACAAGAAGAAGTCGGCAGGATTACTTTTGGGAATGACAGTGCTATGGTTTTTGTTTGAGATTGTTGAATACAACTTTGTCACTCTTATTTGTCATCTCTCTATTACCTCCATGCTCATCTTCTTCATTTGGTGCACCGGTGCTGAATTTTTCAAATGGAATCCTCCACGGCTTCCAGAAGCAATATTGAAAGAATCAACATTCAAAGACGTTGCTTCCACTTTGCACAGAAGAATCAACCAATTCTTCACCAAGATTTTCGATATCGCTTATGGAAAAGATCTCCCACTCTTCTTTCTGGCCATTGTTTCACTCTATCTTTTATCAGTGATTGGATCATACGTTAGCTTTCTCAATCTCCTTTATTTCGGATTTGTGGCATTGGAAACTTTGCCATTTCTATATGAGAAATATGAAGAGGAGGTTGATCAACTTGCTGGGATGGCCATTTATCAAACCAAGAAATCTTACAGAAATTTCGATGCCAAATTCCTCAACAAGATCCCAAGAGGACCTGTCAAAGACAAGAAACTCAGATGA 660 40.91 MSSYSDSDDDSVPRSKLFGRRRPVYDIFGGGRVADILLWKDKKKSAGLLLGMTVLWFLFEIVEYNFVTLICHLSITSMLIFFIWCTGAEFFKWNPPRLPEAILKESTFKDVASTLHRRINQFFTKIFDIAYGKDLPLFFLAIVSLYLLSVIGSYVSFLNLLYFGFVALETLPFLYEKYEEEVDQLAGMAIYQTKKSYRNFDAKFLNKIPRGPVKDKKLR* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4388895 4390997 + CsaV3_1G006910.1 Csa01g00691 515188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00691 219 PANTHER RETICULON-LIKE PROTEIN B9 5 217 - -
Csa01g00691 219 Pfam Reticulon 33 188 IPR003388 -
Csa01g00691 219 PANTHER RETICULON 5 217 IPR045064 GO:0009617
Csa01g00691 219 ProSiteProfiles Reticulon domain profile. 33 219 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00691 - - - csv:101215902 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00691 Csa-Chr1:4388895 Csa03g02171 Csa-Chr3:18852264 5.67E-65 dispersed
Csa01g00691 Csa-Chr1:4388895 Csa05g00229 Csa-Chr5:1400483 1.09E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g283 . . . . . . . . . Cmo18g00041 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00209 Csa01g00691 Chy12g01420 Cme12g01856 . . . . . . . . Sed01g1743 . . . Cma18g00051 . Car18g00044 Cpe09g01130 . Bhi08g01258 Tan05g2233 Cmetu10g1289 Lac10g0263 Hepe07g2374 . . Cla04g01073 Cam04g1117 Cec01g1631 Cco01g1677 Clacu04g1143 Cmu04g1124 Cre01g1425 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012074 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00691 Csa_Chr01 FPKM 2.166985 4.006216 4.807907 3.263958 4.575823 5.108582 4.29086 10.228565 10.042211 11.73621