Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00699 ATGGCGGCTCCCGCTGTATCTCAGCCCCGTTCCTCTAAAACCGAGTCCTACGTTGATAACAAGCGCAAAGAGGACGTTCGACAGGCTAATATCATAGCAGCTCGAGCCATCGCTGATGCTGTTCGTACTAGTCTTGGCCCTAAGGGTATGGACAAGATGATCTCCACGGCTTCCGGTGAGGTTATTATTACTAATGATGGAGCCACCATTCTCAATAAAATGGAAGTTCTCCAACCTGCTGCTAAAATGCTTGTCGAACTCTCCAAGTCGCAGGACTCTGCTGCTGGAGATGGTACGACTACCGTGGTCGTTATTGCAGGTTCACTTCTTAAACAGTGTCTTTCTCTTTTGTCTCATGGGATTCATCCCACTGTAATATCAGATTCCCTCCATAAGACCGCCATTAAGGCTGTTGATGTGTTGACGGCAATGGCTGTCCCTGTTGAGCTCTCGGATAGAGAGTCGTTGATTAAATCGGCGAGTACTTCGCTTAATAGTAAAGTTGTTAGTCAGTACTCGACACTGCTTGCTCCGCTTGCTGTTGATTCTGTGCTCTCGGTTGTTGATCCTGGTAAGCCAGATTTGGTTGATTTGAGAGATATTAAGATTGTGAAGAAGCTGGGCGGGACCGTGGATGATACTGTGCTTGTGAAGGGATTGGTGTTTGACAAGAAGGTAAGTCATGCGGCTGGTGGACCGACCAGAATGGAGAATGCTAAGATTGCAGTTATTCAATTCCAGATTTCACCACCTAAAACTGACATTGAACAGAGTATTGTGGTCTCGGATTATACTCAGATGGATAGGATATTGAAAGAGGAGAGAAATTACATTTTAGGTATGATTAAGAAGATTAGAGCAACTGGGTGTAACGTATTGTTGATTCAGAAGAGTATCTTGAGAGATGCAGTGACAGATTTGTCACTTCATTACCTTGCTAAAGCTAAGATTTTGGTGATTAAGGATGTTGAACGCGATGACATTGAATTCATTACGAAGACCCTCAATTGTCTTCCAATTGCAAATATTGAACATTTCCGTGCTGAGAAGTTGGGGTATGCAGAGCTTGTTGAGGAGGCTTCAATGGGAGACGGGAAGATTGTTAAGATCACGGGCATTAAGGATATGGGGCGGACTGCTACCGTACTTGTTCGGGGGTCTAACCAACTAGTGATTGATGAGGCTGAGCGAAGCTTGCATGATGCCCTGTGCGTTGTTAGGTGTTTGGTAAATAAAAGGTTCTTGATTGCAGGTGGTGGTGCACCAGAAATTGAGCTATCAAGGCAACTGGGTGCATGGGCAAAAGTGTTGCATGGCATGGAGGGTTACTGTGTTCGTTCCTTTGCAGAGGCTCTTGAAGTTATCCCATATACTTTGGCTGAAAATGCTGGGTTGAACCCAATCACCATTGTAACAGAACTGAGGAATCGTCATGCTCAGGGTGAGATCAATACTGGAATTAATGTAAGGAAGGGGCAGATCACGAACATCTTGGAGGAGAATGTTGTTCAGCCACTTCTCGTAAGTACAAGTGCAATCACTCTAGCTACAGAGTGTGTTCGAATGATTTTGAAGATTGATGACATTGTCACAGTGAGGTAG 1602 44.82 MAAPAVSQPRSSKTESYVDNKRKEDVRQANIIAARAIADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGSLLKQCLSLLSHGIHPTVISDSLHKTAIKAVDVLTAMAVPVELSDRESLIKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPGKPDLVDLRDIKIVKKLGGTVDDTVLVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIRATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDDIEFITKTLNCLPIANIEHFRAEKLGYAELVEEASMGDGKIVKITGIKDMGRTATVLVRGSNQLVIDEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4425616 4428136 - CsaV3_1G006990.1 Csa01g00699 515196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00699 533 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Csa01g00699 533 Pfam TCP-1/cpn60 chaperonin family 37 531 IPR002423 GO:0005524
Csa01g00699 533 ProSitePatterns Chaperonins TCP-1 signature 3. 91 99 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Csa01g00699 533 SUPERFAMILY GroEL equatorial domain-like 20 531 IPR027413 -
Csa01g00699 533 SUPERFAMILY GroEL-intermediate domain like 152 412 IPR027410 -
Csa01g00699 533 CDD TCP1_delta 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Csa01g00699 533 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 13 531 - -
Csa01g00699 533 PANTHER CHAPERONIN 13 531 IPR017998 GO:0140662
Csa01g00699 533 TIGRFAM chap_CCT_delta: T-complex protein 1, delta subunit 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Csa01g00699 533 Gene3D - 34 530 IPR027413 -
Csa01g00699 533 Gene3D GroEL 218 377 IPR027409 -
Csa01g00699 533 Gene3D - 147 413 IPR027410 -
Csa01g00699 533 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g00699 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662
Csa01g00699 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662
Csa01g00699 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662
Csa01g00699 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662
Csa01g00699 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662
Csa01g00699 533 SUPERFAMILY GroEL apical domain-like 213 386 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00699 K09496 CCT4; T-complex protein 1 subunit delta - csv:101217571 1004.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00699 Csa-Chr1:4425616 Csa02g01788 Csa-Chr2:17295780 3.02E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008900 2 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00699 Csa_Chr01 FPKM 5.334826 4.754344 6.133438 7.858642 11.704248 9.037127 9.515665 10.322847 10.775838 11.93104