Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00700 ATGGATATCGAGGAGGAAATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTTCTAATCAAGATGCAAAGATGGAGGATGTTGTGGAATCAAAAAGTCTGGAAGAAGATGTGCAGACAGAAGAAACTGTGAAGTCCAACGAGATGGAAGAAGTGAAGGAGAACACATCTGCTAAGGAGAAGGAAGTTTCGTTGGCTGATGAAAACGAAGTTGAAGAGGATTTGGAATTGGATCGGAAAAGACATTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGAAAGTCTACAATTGGAGGCCAGATACTTTTCCTCAGCGATCAGGTTGATGAGCGTACAATCCAAAAGTATGAAAAAGAAGCAAAAGATAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGAAAAACTGTCGAAGTGGGTAGAGCGCATTTTGAAACTGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTTCCAAATATGATCAGTGGGGCATCTCAAGCTGATATAGGGGTTCTGGTAATTTCTGCCAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCCAAAACTTTGGGTGTTGCCAAGCTTCTTGTTGTAGTGAATAAGATGGATGAACCCACTGTAAAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCCAAGATGGCACCCTTCTTGAAGTCTTCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCCGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGCCCATGGTGGGATGGTCCGTGCTTCTTTGAAATCCTTGATACGATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCAATCATTGACAAGTTCAAGGACATGGGAACAACTGTTATGGGTAAAGTGGAATCTGGTACTGTTCGTGAGGGAGATTCCTTATTGTTAATGCCAAATAAGATTCAGGTGAAAGTTACTGCTGTGATGTGTGATGAAAATAAAGTTCGGAGTGCTGGACCTGGGGAAAATCTTCGTGTTAGAATATCTGGAATTGAAGAAGAAGATATAATGTCTGGGTTTGTACTATCAAGCATTGCGAAGCCAATTCCCTCTGTTTCTGAGTTTATTGCACAGTTGCAGATTCTTGAGCTTCTGGATAATGCAATATTTACAGCTGGATATAAGGCCGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAGATCATAGAGCTGCTACAGCAGATTGATCCGAAGACTAGGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTCATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATCGAGAAGTTTTCTGATTTTCCTCAGCTTGGAAGATTTACTCTTCGTACTGAAGGGAAAACAGTTGCCGTAGGAAAAGTCACCGATATTTCTTCTGCTAGCAATTAA 1542 40.66 MDIEEEIRALELDPPDVNGVSNQDAKMEDVVESKSLEEDVQTEETVKSNEMEEVKENTSAKEKEVSLADENEVEEDLELDRKRHLNVVFIGHVDAGKSTIGGQILFLSDQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDEPTVKWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWDGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLLMPNKIQVKVTAVMCDENKVRSAGPGENLRVRISGIEEEDIMSGFVLSSIAKPIPSVSEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVTDISSASN* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4428900 4440320 - CsaV3_1G007000.1 Csa01g00700 515197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00700 513 Gene3D Translation factors 401 509 - -
Csa01g00700 513 Pfam Elongation factor Tu domain 2 326 392 IPR004161 GO:0005525
Csa01g00700 513 MobiDBLite consensus disorder prediction 1 69 - -
Csa01g00700 513 PANTHER TRANSLATION FACTOR 39 504 - -
Csa01g00700 513 PANTHER BNAA06G12300D PROTEIN 39 504 - -
Csa01g00700 513 CDD EF1_alpha 86 307 - -
Csa01g00700 513 Gene3D - 63 305 IPR027417 -
Csa01g00700 513 SUPERFAMILY Translation proteins 306 398 IPR009000 -
Csa01g00700 513 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 403 508 IPR009001 -
Csa01g00700 513 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Csa01g00700 513 PRINTS GTP-binding elongation factor signature 165 175 IPR000795 GO:0003924|GO:0005525
Csa01g00700 513 PRINTS GTP-binding elongation factor signature 181 192 IPR000795 GO:0003924|GO:0005525
Csa01g00700 513 PRINTS GTP-binding elongation factor signature 225 234 IPR000795 GO:0003924|GO:0005525
Csa01g00700 513 Pfam Elongation factor Tu C-terminal domain 399 508 IPR004160 -
Csa01g00700 513 CDD eRF3_C_III 400 508 - -
Csa01g00700 513 Pfam Elongation factor Tu GTP binding domain 82 289 IPR000795 GO:0003924|GO:0005525
Csa01g00700 513 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 311 IPR000795 GO:0003924|GO:0005525
Csa01g00700 513 MobiDBLite consensus disorder prediction 27 68 - -
Csa01g00700 513 CDD eRF3_II 313 394 - -
Csa01g00700 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 317 IPR027417 -
Csa01g00700 513 Gene3D Translation factors 311 395 - -
Csa01g00700 513 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 138 153 IPR031157 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00700 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 996.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00700 Csa-Chr1:4428900 Csa05g01771 Csa-Chr5:21083649 6.77E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00700 Csa_Chr01 FPKM 38.530735 41.521744 39.815407 40.002934 36.841587 47.154591 34.334988 68.566284 69.583847 63.886604