Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00706 ATGGGTGACAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTATTGGGAAAGGAAGCTACGGAATTGTTGGTTCTGCCATTGACACCCAGACCGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATACGGATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCAAATATTGTAGAGATAAAGCATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTAATGAAGTCTGATCTTCACCATGTAATTAAGACAAATAATGATCTTTCTCCTCGGCAGCATAAATTTTTTCTGTACCAGCTTCTTAGTGGCCTAAAATATATTCATACTGCAAATGTCCTTCATCGAGATTTGAAGCCAAAAAACATACTTGCTAATGCGGACTGCAGACTCAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGCGATGCACCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCTGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTGACAGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATCACCGATCTGTTTGGCTCTCCTGAACCCGAGGCCATTGCAAAGATTCGTAATGAGAAGGCGAGAAGGTATCTTGGAAACATGCGTAAAAAACAACCAGTTCCATTCTCACGAAAATTTCCTAATGTTGACCCAATGGCACTTTGTTTACTGGAACGTCTCCTAGCATTTGATCCCAAATGTCGTCTAACAGCTGCAGAGGCCCTTGCTGATCCTTACTTCAACGGCATGGGGAAACCAGAACTTGAACCTTCCATTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGGAAGTTATCAAAAGATGATGTTAGAGAGTTGATTTATGCAGAGATTTTAGAGTATCATCCCCAGATGCGTCAGGGTTGTCTACGTGGTGGAGACCATCCAACTACCTTTATGTATCCAAGTGGGGTTGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCACGGTAAAGGTGAAAGAAGAAGCCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGGCCTACCGAGCAGAACAACACTGAGAATAGCATCGATTCCGAAAGAGGGAAAGATAAGAGTGCTCATCTCTTGAAAAGTGCAAGTATCAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGACATATGAGGTGGAAGAAACTGAAGTGAAAAATGAAGCAGTGGATGGCATGTCTCAAAAGATTGCAGTCCTTCAAACTTAA 1440 41.04 MGDKQSEFFTEYGEASRYQIQEVIGKGSYGIVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKTNNDLSPRQHKFFLYQLLSGLKYIHTANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGSPEPEAIAKIRNEKARRYLGNMRKKQPVPFSRKFPNVDPMALCLLERLLAFDPKCRLTAAEALADPYFNGMGKPELEPSIQPISKLEFEFERRKLSKDDVRELIYAEILEYHPQMRQGCLRGGDHPTTFMYPSGVDRFKLQFAHLEEHHGKGERRSPLQRQNISLPRERVRPTEQNNTENSIDSERGKDKSAHLLKSASISASRCVGVIPKETYEVEETEVKNEAVDGMSQKIAVLQT* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4473313 4477513 - CsaV3_1G007060.1 Csa01g00706 515203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00706 479 ProSitePatterns MAP kinase signature. 53 156 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa01g00706 479 SUPERFAMILY Protein kinase-like (PK-like) 14 315 IPR011009 -
Csa01g00706 479 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Csa01g00706 479 MobiDBLite consensus disorder prediction 398 421 - -
Csa01g00706 479 SMART serkin_6 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00706 479 Pfam Protein kinase domain 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00706 479 ProSiteProfiles Protein kinase domain profile. 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00706 479 Gene3D Transferase(Phosphotransferase) domain 1 104 332 - -
Csa01g00706 479 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Csa01g00706 479 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 438 - -
Csa01g00706 479 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 438 - -
Csa01g00706 479 CDD STKc_TDY_MAPK 17 354 - -
Csa01g00706 479 MobiDBLite consensus disorder prediction 389 431 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00706 Csa01g00426 CCT
Csa01g00706 Csa01g00426 ECH
Csa01g00426 Csa01g00706 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00706 Csa-Chr1:4473313 Csa06g00543 Csa-Chr6:4664720 0 dispersed
Csa01g00904 Csa-Chr1:5630767 Csa01g00706 Csa-Chr1:4473313 7.48E-24 transposed
Csa01g02682 Csa-Chr1:23821500 Csa01g00706 Csa-Chr1:4473313 1.93E-54 transposed
Csa01g02873 Csa-Chr1:25250559 Csa01g00706 Csa-Chr1:4473313 2.13E-09 transposed
Csa03g02856 Csa-Chr3:27343165 Csa01g00706 Csa-Chr1:4473313 1.62E-55 transposed
Csa04g01599 Csa-Chr4:15404816 Csa01g00706 Csa-Chr1:4473313 4.57E-54 transposed
Csa06g01330 Csa-Chr6:11130037 Csa01g00706 Csa-Chr1:4473313 7.74E-57 transposed
Csa06g03711 Csa-Chr6:29675646 Csa01g00706 Csa-Chr1:4473313 1.28E-54 transposed
Csa01g00426 Csa-Chr1:2662730 Csa01g00706 Csa-Chr1:4473313 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77758 PF00069 Pkinase 8.90E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00706 - - csv:101218676 920.228