Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00706 | ATGGGTGACAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTATTGGGAAAGGAAGCTACGGAATTGTTGGTTCTGCCATTGACACCCAGACCGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATACGGATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCAAATATTGTAGAGATAAAGCATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTAATGAAGTCTGATCTTCACCATGTAATTAAGACAAATAATGATCTTTCTCCTCGGCAGCATAAATTTTTTCTGTACCAGCTTCTTAGTGGCCTAAAATATATTCATACTGCAAATGTCCTTCATCGAGATTTGAAGCCAAAAAACATACTTGCTAATGCGGACTGCAGACTCAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGCGATGCACCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCTGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTGACAGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATCACCGATCTGTTTGGCTCTCCTGAACCCGAGGCCATTGCAAAGATTCGTAATGAGAAGGCGAGAAGGTATCTTGGAAACATGCGTAAAAAACAACCAGTTCCATTCTCACGAAAATTTCCTAATGTTGACCCAATGGCACTTTGTTTACTGGAACGTCTCCTAGCATTTGATCCCAAATGTCGTCTAACAGCTGCAGAGGCCCTTGCTGATCCTTACTTCAACGGCATGGGGAAACCAGAACTTGAACCTTCCATTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGGAAGTTATCAAAAGATGATGTTAGAGAGTTGATTTATGCAGAGATTTTAGAGTATCATCCCCAGATGCGTCAGGGTTGTCTACGTGGTGGAGACCATCCAACTACCTTTATGTATCCAAGTGGGGTTGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCACGGTAAAGGTGAAAGAAGAAGCCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGGCCTACCGAGCAGAACAACACTGAGAATAGCATCGATTCCGAAAGAGGGAAAGATAAGAGTGCTCATCTCTTGAAAAGTGCAAGTATCAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGACATATGAGGTGGAAGAAACTGAAGTGAAAAATGAAGCAGTGGATGGCATGTCTCAAAAGATTGCAGTCCTTCAAACTTAA | 1440 | 41.04 | MGDKQSEFFTEYGEASRYQIQEVIGKGSYGIVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKTNNDLSPRQHKFFLYQLLSGLKYIHTANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGSPEPEAIAKIRNEKARRYLGNMRKKQPVPFSRKFPNVDPMALCLLERLLAFDPKCRLTAAEALADPYFNGMGKPELEPSIQPISKLEFEFERRKLSKDDVRELIYAEILEYHPQMRQGCLRGGDHPTTFMYPSGVDRFKLQFAHLEEHHGKGERRSPLQRQNISLPRERVRPTEQNNTENSIDSERGKDKSAHLLKSASISASRCVGVIPKETYEVEETEVKNEAVDGMSQKIAVLQT* | 480 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4473313 | 4477513 | - | CsaV3_1G007060.1 | Csa01g00706 | 515203 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00706 | 479 | ProSitePatterns | MAP kinase signature. | 53 | 156 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Csa01g00706 | 479 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 315 | IPR011009 | - | |
Csa01g00706 | 479 | Gene3D | Phosphorylase Kinase; domain 1 | 34 | 355 | - | - | |
Csa01g00706 | 479 | MobiDBLite | consensus disorder prediction | 398 | 421 | - | - | |
Csa01g00706 | 479 | SMART | serkin_6 | 18 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00706 | 479 | Pfam | Protein kinase domain | 18 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00706 | 479 | ProSiteProfiles | Protein kinase domain profile. | 18 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00706 | 479 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 332 | - | - | |
Csa01g00706 | 479 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 48 | IPR017441 | GO:0005524 | |
Csa01g00706 | 479 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 5 | 438 | - | - | |
Csa01g00706 | 479 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 5 | 438 | - | - | |
Csa01g00706 | 479 | CDD | STKc_TDY_MAPK | 17 | 354 | - | - | |
Csa01g00706 | 479 | MobiDBLite | consensus disorder prediction | 389 | 431 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g00706 | Csa01g00426 | CCT | |
Csa01g00706 | Csa01g00426 | ECH | |
Csa01g00426 | Csa01g00706 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00706 | Csa-Chr1:4473313 | Csa06g00543 | Csa-Chr6:4664720 | 0 | dispersed | |
Csa01g00904 | Csa-Chr1:5630767 | Csa01g00706 | Csa-Chr1:4473313 | 7.48E-24 | transposed | |
Csa01g02682 | Csa-Chr1:23821500 | Csa01g00706 | Csa-Chr1:4473313 | 1.93E-54 | transposed | |
Csa01g02873 | Csa-Chr1:25250559 | Csa01g00706 | Csa-Chr1:4473313 | 2.13E-09 | transposed | |
Csa03g02856 | Csa-Chr3:27343165 | Csa01g00706 | Csa-Chr1:4473313 | 1.62E-55 | transposed | |
Csa04g01599 | Csa-Chr4:15404816 | Csa01g00706 | Csa-Chr1:4473313 | 4.57E-54 | transposed | |
Csa06g01330 | Csa-Chr6:11130037 | Csa01g00706 | Csa-Chr1:4473313 | 7.74E-57 | transposed | |
Csa06g03711 | Csa-Chr6:29675646 | Csa01g00706 | Csa-Chr1:4473313 | 1.28E-54 | transposed | |
Csa01g00426 | Csa-Chr1:2662730 | Csa01g00706 | Csa-Chr1:4473313 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77758 | PF00069 | Pkinase | 8.90E-68 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00706 | - | - | csv:101218676 | 920.228 |