Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00707 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGTAGCTGAAGGGTCTACTTCATCGAGGAGCAATAAAGTAATGGAGGTTTCATCGCCTGATAAGCTGCCATCTCGCTCCCGGCCGACCCATTTCAGTTCGGAGCATAAACCCTTCTCGGGAATATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTGCGGATCCTACTGCAGGCGAGATAATGGAGCCATCGGATTCAGTATCTAGCAGAGACGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAATTCGAGGGATCCTGATATAGAAGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCTCGAGAGGATCCTGAAGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTCTATGACCTATATGGAGTCTTCACCAGATCCACTTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATAAATAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAGATGCAGACAGAGTCTCCAATTTCTGTAAATCATTATTTGGTGCGGAAACTTGCTGCTTTAGTTTCAGATCATATGGGGGGACCAGTGGGTGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGGAGTATGGTTTTGCCACTTGGCTCCCTTACTGTTGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGTTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAAGGACCACAGTACACAGGTTCTGATGATGTGGCAATGAACTTTGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCTCCTTTTTCGGCCAGTCCAGTTTCTAGAGATGTTGATTCCTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAAGGCCCGCAATCTCAGTGCCACAAAGGAATACGATTCTCCCAATATCGACAAGGTCCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGTATGCACACTAGATCACCATCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAGAAGCTTCATGACGTGTTGCTTGAAAGTGGTGTAGTTGCTCCCCCAAATTTGTTTACCGAGGCATACCCTGACCAAATAGATGTTATTGTCGAGTCTAAGTCACCAACTGAAGACAAGGATCAAAGTAGAAAGCTGCCTGGTATCTGTGAAAGTGCAGATAAGAATGATCCTCGTCTATCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGACTGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGTACATTAAACCTCTGGAATTCAACCTTTCTCTTGATTCAAGAGAAGCAGGCGGACAACCTATACCCTTACCATTTGAGGTAACTCCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCGTCAATGGTGGTAGCTGCAGCAAAGAGTAGCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACTGCAACCGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCTGATGCTGCTCTTTATGAGCTGCGTGGAAGTGGAGATAGGGAGCATGATGCCTGTGGAGACAATTCAGAGGGTGAACGTATATCAGATAGATCAGCTGGTAACGAAAGCACAAAATCTGACATTACCCTTGATGATGTTGCAGAATGTGAGATCCCATGGGAAGAAATTTCCTTGGGAGAGCGTATTGGACTTGGATCGTATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGTGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCTCTTGATGCAGCTCGGGGAATGAACTATTTGCACAACTGCACGCCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGCGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACTGCTGGAACCGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCCGATGAAAAGTGTGACGTTTATAGTTATGGAGTCATACTATGGGAGCTTTCTACAATGCAACAGCCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTGGATCCTGCCATTGCTGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCCGAGATTATGGCTGCACTAAAGCCGCTGCAAAAGCCATTGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGGTAGTGGTCGTGACAAGGCTAGATTATTGCAAGTCACCGAAGACCCATCAGGCTAG 3036 45.52 MKNLLKKFHIMSSGQSDDVAEGSTSSRSNKVMEVSSPDKLPSRSRPTHFSSEHKPFSGISGWLNSVTNRRSPSPPSSADPTAGEIMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTRSTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMQTESPISVNHYLVRKLAALVSDHMGGPVGDPEKMLRKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKFLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPVSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKARNLSATKEYDSPNIDKVPSRDFASKSNYPGMHTRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKLPGICESADKNDPRLSNFLPPLPQPRLHSRASPTHGQQLYIKPLEFNLSLDSREAGGQPIPLPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSSDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADAALYELRGSGDREHDACGDNSEGERISDRSAGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPLSSSQVPRPNAPAGSGRDKARLLQVTEDPSG* 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4485111 4496170 + CsaV3_1G007070.1 Csa01g00707 515204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00707 1011 MobiDBLite consensus disorder prediction 676 705 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 520 538 - -
Csa01g00707 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Csa01g00707 1011 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00707 1011 MobiDBLite consensus disorder prediction 51 78 - -
Csa01g00707 1011 SMART serkin_6 722 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00707 1011 MobiDBLite consensus disorder prediction 97 116 - -
Csa01g00707 1011 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 1009 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 978 1011 - -
Csa01g00707 1011 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 520 547 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 1 116 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 16 44 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 377 461 - -
Csa01g00707 1011 Gene3D Transferase(Phosphotransferase) domain 1 801 985 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 380 406 - -
Csa01g00707 1011 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672|GO:0006468
Csa01g00707 1011 SUPERFAMILY Protein kinase-like (PK-like) 705 972 IPR011009 -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 676 699 - -
Csa01g00707 1011 MobiDBLite consensus disorder prediction 442 458 - -
Csa01g00707 1011 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 1009 - -
Csa01g00707 1011 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524
Csa01g00707 1011 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Csa01g00707 1011 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672|GO:0006468
Csa01g00707 1011 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672|GO:0006468
Csa01g00707 1011 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672|GO:0006468
Csa01g00707 1011 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672|GO:0006468
Csa01g00707 1011 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672|GO:0006468
Csa01g00707 1011 CDD STKc_MAP3K-like 728 974 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00707 Csa-Chr1:4485111 Csa04g02535 Csa-Chr4:25059511 5.67E-77 dispersed
Csa01g00707 Csa-Chr1:4485111 Csa06g02656 Csa-Chr6:23385603 1.59E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77759 PF07714 PK_Tyr_Ser-Thr 5.40E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00707 - - csv:101209024 1930.22