Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00712 ATGTGGATGATGGGTTACAATGACGCTCAAGATTTGAACTTCCCTTCTGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCTTCTTCTCATACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCCTCGCCGCCTGTGGTGGTGAGCTCCCGGTGGAATCCAACGCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGAACTCGAACCCCGTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCTTCAGCCATTACTACTGCCGACCACTCGACTCGTGACCTCGATGTCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAGGAATCTGTTCCAATTCAAGGGGCAGCAAAAGGCAATGTAATGGGGGCAACAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAAGAATTGCACCAAATAAGAAATAACAACACCAACACCAACAACTTTGCTGAAAAGGATACAAATAACATCATCATCAACAATAACAACAACAACATTAACAGTCCACCCTCTTTGCAATTGTTGCATTGTTTTCCGGCAACCGCTGCTCTCCGTGGTGGTAGCCAACTAATGATGAACATTGCCCCTATCACAACTACAGCCACAGTGACAACAATAATGCACCCAAAATGTCATAGAAGAAGTAATATTAATGTAATTTCAGGTAATTTTGATGTTATTGGAGTTGAAGAAGAATTAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGCAGAATGTGGGGAATCTGAAACCCTACAACTATTTCCATTGTGCAGTGATAGAAGAAATGGTGGAGAGATTGTTGGAGGCAAAAATAATAATGGATGTGAAACAGTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTACCATTGAAGAATTGA 1173 42.03 MWMMGYNDAQDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSHTNDFFSQFHHMATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSTRDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQGAAKGNVMGATDCRTENGWIQFEELHQIRNNNTNTNNFAEKDTNNIIINNNNNNINSPPSLQLLHCFPATAALRGGSQLMMNIAPITTTATVTTIMHPKCHRRSNINVISGNFDVIGVEEELEDEEEEEEEEAECGESETLQLFPLCSDRRNGGEIVGGKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4514227 4517339 - CsaV3_1G007120.1 Csa01g00712 515209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00712 390 SMART HOX_1 77 144 IPR001356 GO:0003677
Csa01g00712 390 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Csa01g00712 390 CDD homeodomain 81 141 IPR001356 GO:0003677
Csa01g00712 390 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Csa01g00712 390 Pfam Homeodomain 80 139 IPR001356 GO:0003677
Csa01g00712 390 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 390 IPR044555 GO:0003700|GO:0099402
Csa01g00712 390 Gene3D - 79 146 - -
Csa01g00712 390 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 390 - -
Csa01g00712 390 Coils Coil 318 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00712 Csa01g00431 CCT
Csa01g00431 Csa01g00712 ECH
Csa01g00712 Csa01g00431 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00712 Csa-Chr1:4514227 Csa02g01931 Csa-Chr2:18135487 2.44E-27 dispersed
Csa03g00033 Csa-Chr3:382154 Csa01g00712 Csa-Chr1:4514227 1.09E-14 transposed
Csa03g03626 Csa-Chr3:32311997 Csa01g00712 Csa-Chr1:4514227 1.16E-13 transposed
Csa04g02711 Csa-Chr4:26192300 Csa01g00712 Csa-Chr1:4514227 2.23E-13 transposed
Csa06g00167 Csa-Chr6:1116567 Csa01g00712 Csa-Chr1:4514227 4.76E-27 transposed
Csa06g01701 Csa-Chr6:14959644 Csa01g00712 Csa-Chr1:4514227 7.86E-28 transposed
Csa06g03668 Csa-Chr6:29480418 Csa01g00712 Csa-Chr1:4514227 4.99E-16 transposed
Csa01g00431 Csa-Chr1:2700556 Csa01g00712 Csa-Chr1:4514227 1.42E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30672 PF00046 Homeodomain 2.20E-19 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00712 - - csv:101209268 687.952