Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00712 ATGTGGATGATGGGTTACAATGACGCTCAAGATTTGAACTTCCCTTCTGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCTTCTTCTCATACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCCTCGCCGCCTGTGGTGGTGAGCTCCCGGTGGAATCCAACGCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGAACTCGAACCCCGTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCTTCAGCCATTACTACTGCCGACCACTCGACTCGTGACCTCGATGTCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAGGAATCTGTTCCAATTCAAGGGGCAGCAAAAGGCAATGTAATGGGGGCAACAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAAGAATTGCACCAAATAAGAAATAACAACACCAACACCAACAACTTTGCTGAAAAGGATACAAATAACATCATCATCAACAATAACAACAACAACATTAACAGTCCACCCTCTTTGCAATTGTTGCATTGTTTTCCGGCAACCGCTGCTCTCCGTGGTGGTAGCCAACTAATGATGAACATTGCCCCTATCACAACTACAGCCACAGTGACAACAATAATGCACCCAAAATGTCATAGAAGAAGTAATATTAATGTAATTTCAGGTAATTTTGATGTTATTGGAGTTGAAGAAGAATTAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGCAGAATGTGGGGAATCTGAAACCCTACAACTATTTCCATTGTGCAGTGATAGAAGAAATGGTGGAGAGATTGTTGGAGGCAAAAATAATAATGGATGTGAAACAGTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTACCATTGAAGAATTGA 1173 42.03 MWMMGYNDAQDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSHTNDFFSQFHHMATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSTRDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQGAAKGNVMGATDCRTENGWIQFEELHQIRNNNTNTNNFAEKDTNNIIINNNNNNINSPPSLQLLHCFPATAALRGGSQLMMNIAPITTTATVTTIMHPKCHRRSNINVISGNFDVIGVEEELEDEEEEEEEEAECGESETLQLFPLCSDRRNGGEIVGGKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4514227 4517339 - CsaV3_1G007120.1 Csa01g00712 515209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00712 390 SMART HOX_1 77 144 IPR001356 GO:0003677
Csa01g00712 390 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Csa01g00712 390 CDD homeodomain 81 141 IPR001356 GO:0003677
Csa01g00712 390 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Csa01g00712 390 Pfam Homeodomain 80 139 IPR001356 GO:0003677
Csa01g00712 390 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 390 IPR044555 GO:0003700|GO:0099402
Csa01g00712 390 Gene3D - 79 146 - -
Csa01g00712 390 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 390 - -
Csa01g00712 390 Coils Coil 318 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00712 - - - csv:101209268 687.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00712 Csa01g00431 CCT
Csa01g00431 Csa01g00712 ECH
Csa01g00712 Csa01g00431 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00712 Csa-Chr1:4514227 Csa02g01931 Csa-Chr2:18135487 2.44E-27 dispersed
Csa03g00033 Csa-Chr3:382154 Csa01g00712 Csa-Chr1:4514227 1.09E-14 transposed
Csa03g03626 Csa-Chr3:32311997 Csa01g00712 Csa-Chr1:4514227 1.16E-13 transposed
Csa04g02711 Csa-Chr4:26192300 Csa01g00712 Csa-Chr1:4514227 2.23E-13 transposed
Csa06g00167 Csa-Chr6:1116567 Csa01g00712 Csa-Chr1:4514227 4.76E-27 transposed
Csa06g01701 Csa-Chr6:14959644 Csa01g00712 Csa-Chr1:4514227 7.86E-28 transposed
Csa06g03668 Csa-Chr6:29480418 Csa01g00712 Csa-Chr1:4514227 4.99E-16 transposed
Csa01g00431 Csa-Chr1:2700556 Csa01g00712 Csa-Chr1:4514227 1.42E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00712 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 8.8e-50 194.5
Csa03g03626 . 4 253 Wox Gene Family AT3G03660 52.9 5.5e-53 204.9
Csa03g03626 . 19 258 Wox Gene Family AT5G17810 50.2 2.2e-53 206.1
Csa02g01931 . 5 161 Wox Gene Family AT1G46480 65.1 1.3e-50 196.4
Csa01g00712 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 8.8e-50 194.5
Csa02g01931 . 5 161 Wox Gene Family AT1G46480 65.1 1.3e-50 196.4
Csa03g03626 . 4 253 Wox Gene Family AT3G03660 52.9 5.5e-53 204.9
Csa03g03626 . 19 258 Wox Gene Family AT5G17810 50.2 2.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30672 PF00046 Homeodomain 2.20E-19 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00712 Csa_Chr01 FPKM 22.543369 24.655825 24.830782 23.431032 35.701244 34.963017 38.657406 24.888933 27.769958 24.519579