Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00713 ATGCGTGAGATTCTGCACATTCAAGGAGGGCAATGTGGGAACCAAATCGGCTCCAAGTTCTGGGAGGTCGTTTGCGACGAGCATGGCATCGATCCCACCGGCAGGTATGCTGGAAATTCAGAATTGCAGCTGGAGAGAGCGAACGTGTATTACAATGAAGCGAGTGGAGGAAGGTACGTGCCAAGGGCGGTGTTGATGGACCTTGAACCAGGAACGATGGATGCGGTTAGGACGGGTCCATACGGGCAGATTTTCCGACCAGATAATTTCGTGTTCGGGCAATCGGGTGCTGGTAACAATTGGGCTAAAGGCCATTACACGGAAGGTGCAGAGCTAATTGATTCAGTGCTTGATGTTGTCAGGAAAGAAGCTGAGAATTGTGATTCTCTTCAGGGGTTTCAAGTGTGCCATTCACTTGGAGGTGGAACAGGATCAGGAATGGGGACTCTTCTAATCTCCAAGATCAGGGAAGAATATCCAGATAGAATGATGTTAACTTTCTCAGTGTTTCCATCTCCAAAGGTCTCAGACACAGTTGTAGAGCCATACAATGCTACTCTTTCAGTACATCAATTGGTAGAGAATGCTGATGAGTGTATGGTACTTGACAATGAAGCACTCTATGACATCTGTTTTAGGACTCTAAAACTCACAACCCCAAGTTTTGGGGATTTGAACCATCTAATTTCAGCAACAATGAGTGGAGTTACATGTTGTTTGAGATTCCCTGGCCAGCTGAATTCCGATCTCCGAAAACTGGCTGTGAACTTAATCCCTTTCCCTCGACTTCACTTCTTCATGGTTGGATTCGCACCTTTGACCTCTCGTGGATCACAGCAATACAGAGCACTGACTGTTCCTGAACTGACACAACAAATGTGGGATGCTAAGAACATGATGTGTGCAGCGGATCCACGCCACGGTCGATATCTTACAGCATCTGCAATGTTCCGGGGTAAAATGAGTACGAAAGAAGTCGACGAGCAGATGATGAACGTGCAGAACAAAAACTCTTCTTATTTTGTAGAATGGATTCCAAACAATGTGAAATCTAGTGTTTGTGATATTCCACCTAAAGGGTTCCCAATGGCTTCCACTTTTGTTGGAAACTCAACTTCAATTCAGGAGATGTTTAGAAGAGTGAGTGAGCAATTCACAGCCATGTTTAGAAGGAAGGCTTTCTTGCATTGGTATACTGGAGAGGGAATGGATGAGATGGAGTTTACTGAAGCAGAAAGCAATATGAATGATCTTGTTGCTGAGTATCAACAATATCAAGATGCCACAGCTGATGAAGATCTTGACTATGAAGATGATGTTGGGGATGCCGAGAACTGA 1338 44.92 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGNSELQLERANVYYNEASGGRYVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDSLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPKGFPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDLDYEDDVGDAEN* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4525912 4529061 + CsaV3_1G007130.1 Csa01g00713 515210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00713 445 Gene3D - 263 373 IPR037103 -
Csa01g00713 445 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Csa01g00713 445 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Csa01g00713 445 Gene3D Helix hairpin bin 374 430 IPR023123 -
Csa01g00713 445 SUPERFAMILY Tubulin C-terminal domain-like 244 429 IPR008280 -
Csa01g00713 445 Pfam Tubulin C-terminal domain 261 382 IPR018316 -
Csa01g00713 445 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Tubulin signature 370 398 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 230 239 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 245 258 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 265 281 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 311 329 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 329 343 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 347 370 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 377 388 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 PRINTS Beta-tubulin signature 412 430 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Csa01g00713 445 SMART Tubulin_C_4 246 383 IPR018316 -
Csa01g00713 445 PANTHER TUBULIN 1 437 IPR000217 GO:0005874|GO:0007017
Csa01g00713 445 SMART Tubulin_4 47 244 IPR003008 GO:0005525
Csa01g00713 445 PANTHER TUBULIN BETA-6 CHAIN 1 437 - -
Csa01g00713 445 Coils Coil 408 428 - -
Csa01g00713 445 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Csa01g00713 445 Gene3D Tubulin/FtsZ, GTPase domain 1 262 IPR036525 -
Csa01g00713 445 CDD beta_tubulin 2 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00713 K07375 TUBB; tubulin beta - csv:101220108 893.264
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00713 Csa-Chr1:4525912 Csa01g02610 Csa-Chr1:23094846 0 dispersed
Csa07g00669 Csa-Chr7:4789600 Csa01g00713 Csa-Chr1:4525912 1.37E-125 dispersed
Csa01g00713 Csa-Chr1:4525912 Csa04g01584 Csa-Chr4:15264131 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00713 Csa_Chr01 FPKM 33.427776 37.550201 0.0 0.0 2.696386 3.237416 2.267876 0.246023 0.0 0.0