Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00727 ATGCAAACCCAGATGGGAATTCGTTTCTTCTCTTTGTTTCTTCTCGGATTCTCTCTTTTACTCTCCACTGTGAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCTGCTGTGGGTGGCCGGACTCTTCTCCTCTGGAATGTGACTGATCAGAACACCTGTTCTTGGCCTGGGATTCAATGTGAGGACAATCGTGTCACTGTTCTTCGTCTCCCCGGAGCGGCGCTTTTCGGTCCATTACCGGTTGGGATTTTTGGGAACTTGACGCACCTTCGTACTCTTAGCCTTCGACTCAATGCACTTTCCGGTCAGCTCCCGTCAGATCTCTCTGCCTGCATTAATCTTCGGAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCTTATTCCTGATTTCTTGTTCCAGCTTCCTGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCTGGGGAGATCTCTTCTGGGTTCAACAATTTGACCCGTCTCAAGACTCTGTTCCTTGAGAAAAATCATCTCTCTGGGTCTATCCCGGACTTGAAGATCCCTCTGGATCAGTTCAATGTTTCTAACAATCAGTTAAATGGGTCGGTTCCTAAGGGATTGCAGTCGTTTTCTTCGAGTTCCTTTTTGGGGAATTCTCTCTGCGGAGGTCCTCTTGAAGCTTGCTCTGGTGATCTTGTTGTGCCGACAGGGGAGGTTGGCAACAATGGCGGCTCTGGACACAAGAAAAAGCTGGCAGGGGGAGCCATTGCTGGGATTGTAATTGGATCTGTACTGGCTTTTGTGTTGATTCTTGTAATCTTAATGCTTTTGTGCCGAAAGAAGAGTGCTAAGAAAACGAGTTCAGTCGATGTAGCCACAGTGAAGAATCCTGAAGTGGAAATTCAGGGCAGTAAGCCACCTGGTGAGATTGAAAATGGGGGTTACAGTAATGGTTATACTGTGCCTGCCACTGCTGCTGCTGTTGCTTCTGCTGCAACAGTGGCGGCCGGGACTGCAAAAGGGGAAGTGAGTGCCAATGGTACTGGGACTAAAAAATTGGTGTTCTTTGGTAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCTGAAGTGTTGGGGAAAGGAACCTTTGGGACTGCTTACAAAGCTGTTTTGGAAGTGGGTTCTGTTGTGGCCGTGAAGAGGTTGAAGGATGTTACCATAACAGAGAGGGAATTTAGAGAGAAGATTGAAGCTGTTGGATCCATGGATCATGAAAGCTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTTTATGATTACATGGCCATGGGAAGTTTATCTGCTCTCTTACATGGAAACAAAGGCGCTGGTAGGACTCCATTGAATTGGGAAATCAGGTCCGGAATTGCCCTTGGAGCTGCCCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCTTCCAATATTCTTCTAACAAAATCTTATGATGCTCGAGTTTCTGATTTCGGTTTAGCACATCTTGTCGGACCACCTTCCACACCCACCAGAGTTGCTGGTTACCGTGCACCAGAGGTCACCGATCCCCGTAAAGTATCCCACAAGGCTGATGTCTATAGCTTTGGCGTATTGCTTTTGGAGCTTTTGACAGGAAAGGCTCCTACACATTCCCTTTTAAACGAGGAAGGAGTTGATCTACCTAGATGGGTGCAGTCAGTTGTTAGGGAAGAGTGGACTTCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAACGTTGAGGAGGAGATGGTTCAACTATTGCAACTTGCAGTCGATTGTGCAGCTCAGTATCCTGACAAGCGTCCCTCAATGTCGGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCCTTCACGAAGCTGTCAATCCACAACCCGACGCTGCTCACGATTCAGACGATGCATCTTCTAGGTGA 1992 46.99 MQTQMGIRFFSLFLLGFSLLLSTVKPDLASDRTALLALRSAVGGRTLLLWNVTDQNTCSWPGIQCEDNRVTVLRLPGAALFGPLPVGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNEFSGLIPDFLFQLPDLVRLNLASNNFSGEISSGFNNLTRLKTLFLEKNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGGPLEACSGDLVVPTGEVGNNGGSGHKKKLAGGAIAGIVIGSVLAFVLILVILMLLCRKKSAKKTSSVDVATVKNPEVEIQGSKPPGEIENGGYSNGYTVPATAAAVASAATVAAGTAKGEVSANGTGTKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHESLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPPSTPTRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVTKRIEELRQSSLHEAVNPQPDAAHDSDDASSR* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4605115 4609504 - CsaV3_1G007270.1 Csa01g00727 515224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00727 663 Gene3D Ribonuclease Inhibitor 186 230 IPR032675 -
Csa01g00727 663 PANTHER OS05G0588300 PROTEIN 13 658 - -
Csa01g00727 663 ProSiteProfiles Protein kinase domain profile. 369 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00727 663 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Csa01g00727 663 CDD STKc_IRAK 375 638 - -
Csa01g00727 663 SUPERFAMILY L domain-like 30 211 - -
Csa01g00727 663 Gene3D Phosphorylase Kinase; domain 1 337 443 - -
Csa01g00727 663 Gene3D Ribonuclease Inhibitor 30 135 IPR032675 -
Csa01g00727 663 Gene3D Ribonuclease Inhibitor 136 185 IPR032675 -
Csa01g00727 663 Pfam Protein kinase domain 372 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00727 663 Gene3D Transferase(Phosphotransferase) domain 1 444 659 - -
Csa01g00727 663 SUPERFAMILY Protein kinase-like (PK-like) 373 635 IPR011009 -
Csa01g00727 663 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Csa01g00727 663 PANTHER INACTIVE RECEPTOR KINASE-RELATED 13 658 - -
Csa01g00727 663 MobiDBLite consensus disorder prediction 639 663 - -
Csa01g00727 663 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00727 Csa-Chr1:4605115 Csa01g02093 Csa-Chr1:18117705 0 dispersed
Csa01g00495 Csa-Chr1:3287829 Csa01g00727 Csa-Chr1:4605115 0 transposed
Csa03g02101 Csa-Chr3:17491006 Csa01g00727 Csa-Chr1:4605115 0 transposed
Csa04g00935 Csa-Chr4:6987610 Csa01g00727 Csa-Chr1:4605115 9.79E-101 transposed
Csa05g01619 Csa-Chr5:19188784 Csa01g00727 Csa-Chr1:4605115 0 transposed
Csa01g00459 Csa-Chr1:2909428 Csa01g00727 Csa-Chr1:4605115 1.17E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77761 PF00069 Pkinase 2.80E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00727 - - csv:101222458 1215.68