Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00734 | ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGTCTCCCCGATCTCTCCGACTGTCGTCCTCGCTTCCCCCTTCCACTCCCTCCTTCCTCTGCTCCCCCTGCTCCTGCTGCTCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGTCACGGTAACGGCGGCACCGTCTACAAAGTCCGTCATAAACGCACCTCCACTACTTACGCACTCAAGGTCGTCCACGGCGACTGCGACCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACTGATTCTCCTTATGTTGTTCAGTGTCATGGAATCTTTGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCGACTTTGTCTGAAGCGACGCTGGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCATCGTGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCCGAGACGTACGGCGGAAATTACAACGGTTATGCCGGAGATATTTGGAGTTTAGGCCTTACTCTTCTAGAACTTTACTTAGGTCATTTCCCGTTTCTTCCGGCCGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTGCCAGAGGATGCATCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCACAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGGATAATCGATGA | 963 | 49.33 | MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSDNR* | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4638650 | 4641399 | - | CsaV3_1G007340.1 | Csa01g00734 | 515231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00734 | 320 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00734 | 320 | PANTHER | SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED | 5 | 315 | - | - | |
Csa01g00734 | 320 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Csa01g00734 | 320 | Pfam | Protein kinase domain | 50 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00734 | 320 | SMART | serkin_6 | 48 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00734 | 320 | Gene3D | Phosphorylase Kinase; domain 1 | 36 | 128 | - | - | |
Csa01g00734 | 320 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Csa01g00734 | 320 | ProSiteProfiles | Protein kinase domain profile. | 48 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00734 | 320 | CDD | PKc_MAPKK_plant_like | 47 | 309 | - | - | |
Csa01g00734 | 320 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 5 | 315 | - | - | |
Csa01g00734 | 320 | ProSitePatterns | Protein kinases ATP-binding region signature. | 54 | 77 | IPR017441 | GO:0005524 | |
Csa01g00734 | 320 | Gene3D | Transferase(Phosphotransferase) domain 1 | 130 | 320 | - | - | |
Csa01g00734 | 320 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 311 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00734 | Csa-Chr1:4638650 | Csa03g02812 | Csa-Chr3:26953475 | 3.79E-100 | dispersed | |
Csa01g00734 | Csa-Chr1:4638650 | Csa02g00036 | Csa-Chr2:320884 | 9.29E-80 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77762 | PF00069 | Pkinase | 6.20E-66 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00734 | K20604 | - | csv:101203133 | 616.69 |