Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00734 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGTCTCCCCGATCTCTCCGACTGTCGTCCTCGCTTCCCCCTTCCACTCCCTCCTTCCTCTGCTCCCCCTGCTCCTGCTGCTCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGTCACGGTAACGGCGGCACCGTCTACAAAGTCCGTCATAAACGCACCTCCACTACTTACGCACTCAAGGTCGTCCACGGCGACTGCGACCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACTGATTCTCCTTATGTTGTTCAGTGTCATGGAATCTTTGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCGACTTTGTCTGAAGCGACGCTGGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCATCGTGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCCGAGACGTACGGCGGAAATTACAACGGTTATGCCGGAGATATTTGGAGTTTAGGCCTTACTCTTCTAGAACTTTACTTAGGTCATTTCCCGTTTCTTCCGGCCGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTGCCAGAGGATGCATCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCACAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGGATAATCGATGA 963 49.33 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSDNR* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4638650 4641399 - CsaV3_1G007340.1 Csa01g00734 515231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00734 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Csa01g00734 320 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 315 - -
Csa01g00734 320 MobiDBLite consensus disorder prediction 23 37 - -
Csa01g00734 320 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00734 320 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00734 320 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Csa01g00734 320 MobiDBLite consensus disorder prediction 23 43 - -
Csa01g00734 320 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00734 320 CDD PKc_MAPKK_plant_like 47 309 - -
Csa01g00734 320 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 315 - -
Csa01g00734 320 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Csa01g00734 320 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
Csa01g00734 320 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00734 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00734 Csa-Chr1:4638650 Csa03g02812 Csa-Chr3:26953475 3.79E-100 dispersed
Csa01g00734 Csa-Chr1:4638650 Csa02g00036 Csa-Chr2:320884 9.29E-80 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02954 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 7.3e-134 473.8
Csa02g00036 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 4.3e-126 448.0
Csa02g00082 . 33 304 MAP Kinase Kinase Gene Family AT4G26070 53.1 2.8e-85 312.4
Csa01g02954 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.8e-132 469.2
Csa02g00036 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 6.6e-119 424.1
Csa02g00082 . 33 277 MAP Kinase Kinase Gene Family AT4G29810 58.4 8.4e-82 300.8
Csa03g03971 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.1 1.7e-227 785.4
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT1G51660 64.3 8.4e-120 427.2
Csa01g00734 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 2.0e-84 309.7
Csa03g02812 . 1 332 MAP Kinase Kinase Gene Family AT3G21220 58.2 6.2e-112 401.0
Csa01g00734 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 1.1e-84 310.5
Csa02g00082 . 29 307 MAP Kinase Kinase Gene Family AT5G56580 80.7 3.8e-125 444.9
Csa01g02954 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-117 419.9
Csa02g00036 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.9e-108 389.4
Csa02g00081 . 1 100 MAP Kinase Kinase Gene Family AT5G56580 75.0 1.5e-36 150.6
Csa01g00734 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 9.6e-109 390.2
Csa01g00734 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.9 1.1e-82 303.5
Csa01g00734 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 4.5e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77762 PF00069 Pkinase 6.20E-66 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00734 Csa_Chr01 FPKM 30.605822 31.757282 13.713235 13.624299 11.500709 11.954216 11.775936 21.81732 20.187574 19.147831