Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00734 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGTCTCCCCGATCTCTCCGACTGTCGTCCTCGCTTCCCCCTTCCACTCCCTCCTTCCTCTGCTCCCCCTGCTCCTGCTGCTCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGTCACGGTAACGGCGGCACCGTCTACAAAGTCCGTCATAAACGCACCTCCACTACTTACGCACTCAAGGTCGTCCACGGCGACTGCGACCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACTGATTCTCCTTATGTTGTTCAGTGTCATGGAATCTTTGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCGACTTTGTCTGAAGCGACGCTGGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCATCGTGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCCGAGACGTACGGCGGAAATTACAACGGTTATGCCGGAGATATTTGGAGTTTAGGCCTTACTCTTCTAGAACTTTACTTAGGTCATTTCCCGTTTCTTCCGGCCGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTGCCAGAGGATGCATCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCACAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGGATAATCGATGA 963 49.33 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSDNR* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4638650 4641399 - CsaV3_1G007340.1 Csa01g00734 515231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00734 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Csa01g00734 320 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 315 - -
Csa01g00734 320 MobiDBLite consensus disorder prediction 23 37 - -
Csa01g00734 320 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00734 320 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00734 320 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Csa01g00734 320 MobiDBLite consensus disorder prediction 23 43 - -
Csa01g00734 320 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00734 320 CDD PKc_MAPKK_plant_like 47 309 - -
Csa01g00734 320 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 315 - -
Csa01g00734 320 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Csa01g00734 320 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
Csa01g00734 320 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00734 Csa-Chr1:4638650 Csa03g02812 Csa-Chr3:26953475 3.79E-100 dispersed
Csa01g00734 Csa-Chr1:4638650 Csa02g00036 Csa-Chr2:320884 9.29E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77762 PF00069 Pkinase 6.20E-66 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00734 K20604 - csv:101203133 616.69