Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00739 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAACGAAAAAGACGACCCGCGGGTACTCCAGACCCAGATGCTGAGGTGGTTTCTCTCTCTCCAAAAACCTTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAAAATCTACAGATGCATCGACGTCGACACAAGGTACCATGGAAGCTGTTGAAAAGAACGGAAACAACAACCGTAGTGAGGAAACGGGTGTTTGTTTGCCCCGAACCCAGCTGTTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGAATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGTTCCAAAGGATATGCTGTTCAATCTGATTACAAAGCCCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGATTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATAATTGCAAACTGGGTCATCATCATCAACAGCAACAATCAGAACAAAAAATTCCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCAAAACCAAAACCCAAAATTTACTTCAACTCATCATCATCATCATAACCATGGAGCTGACAAATATTCGAAAAAAACAACAATAATTCCTCAAAGAATTATTGGCCATAATCATCAAAATCTAGACCTACAACTTTCCACCAATTCAACAACTTCAATTCACGTTTCAGTTTCTCCGAAAAGACATGAAAATTACTCAACCCATTTGCAACTTTCCATTGGTTCTTGCAATTATGGTGAGAAATTACATGATCATCATCATGATAATAATAATAACAGTAATGATCGTGATCATCATAATGACGACGACGATGATGAGAAATTAGGTTTTTTGAAGCTGAAAGAAGAAGCTAAAGAGCAAATGAGAATGGCCATGGAAGAGAAAGCAATGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAAGAGTTAGTGAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCACTTGTTTTGAAAGAACATGCCATCAAGAAAATCAATTCTACTATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTCCCTAAAATTTGA 1275 38.27 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTETTTVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCKLGHHHQQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLNQNQNQNPKFTSTHHHHHNHGADKYSKKTTIIPQRIIGHNHQNLDLQLSTNSTTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKLHDHHHDNNNNSNDRDHHNDDDDDEKLGFLKLKEEAKEQMRMAMEEKAMAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALVLKEHAIKKINSTILQITCQVCRQHFHPFPKI* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4678750 4681650 - CsaV3_1G007390.1 Csa01g00739 515236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00739 424 SMART c2h2final6 136 163 IPR013087 -
Csa01g00739 424 SMART c2h2final6 100 130 IPR013087 -
Csa01g00739 424 SMART c2h2final6 57 79 IPR013087 -
Csa01g00739 424 PANTHER OS03G0310200 PROTEIN 14 419 IPR039288 GO:0009630
Csa01g00739 424 Gene3D Classic Zinc Finger 35 100 - -
Csa01g00739 424 Coils Coil 339 401 - -
Csa01g00739 424 MobiDBLite consensus disorder prediction 23 43 - -
Csa01g00739 424 MobiDBLite consensus disorder prediction 193 232 - -
Csa01g00739 424 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Csa01g00739 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Csa01g00739 424 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Csa01g00739 424 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 419 - -
Csa01g00739 424 MobiDBLite consensus disorder prediction 307 331 - -
Csa01g00739 424 MobiDBLite consensus disorder prediction 188 248 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00739 Csa01g00488 CCT
Csa01g00739 Csa01g00488 ECH
Csa01g00488 Csa01g00739 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00488 Csa-Chr1:3175342 Csa01g00739 Csa-Chr1:4678750 6.40E-158 dispersed
Csa01g00739 Csa-Chr1:4678750 Csa05g01292 Csa-Chr5:13726487 3.56E-132 dispersed
Csa01g00739 Csa-Chr1:4678750 Csa06g03225 Csa-Chr6:27277593 1.31E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30676 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00739 K25871 - csv:101210748 764.992