Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00739 | ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAACGAAAAAGACGACCCGCGGGTACTCCAGACCCAGATGCTGAGGTGGTTTCTCTCTCTCCAAAAACCTTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAAAATCTACAGATGCATCGACGTCGACACAAGGTACCATGGAAGCTGTTGAAAAGAACGGAAACAACAACCGTAGTGAGGAAACGGGTGTTTGTTTGCCCCGAACCCAGCTGTTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGAATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGTTCCAAAGGATATGCTGTTCAATCTGATTACAAAGCCCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGATTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATAATTGCAAACTGGGTCATCATCATCAACAGCAACAATCAGAACAAAAAATTCCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCAAAACCAAAACCCAAAATTTACTTCAACTCATCATCATCATCATAACCATGGAGCTGACAAATATTCGAAAAAAACAACAATAATTCCTCAAAGAATTATTGGCCATAATCATCAAAATCTAGACCTACAACTTTCCACCAATTCAACAACTTCAATTCACGTTTCAGTTTCTCCGAAAAGACATGAAAATTACTCAACCCATTTGCAACTTTCCATTGGTTCTTGCAATTATGGTGAGAAATTACATGATCATCATCATGATAATAATAATAACAGTAATGATCGTGATCATCATAATGACGACGACGATGATGAGAAATTAGGTTTTTTGAAGCTGAAAGAAGAAGCTAAAGAGCAAATGAGAATGGCCATGGAAGAGAAAGCAATGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAAGAGTTAGTGAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCACTTGTTTTGAAAGAACATGCCATCAAGAAAATCAATTCTACTATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTCCCTAAAATTTGA | 1275 | 38.27 | MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTETTTVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCKLGHHHQQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLNQNQNQNPKFTSTHHHHHNHGADKYSKKTTIIPQRIIGHNHQNLDLQLSTNSTTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKLHDHHHDNNNNSNDRDHHNDDDDDEKLGFLKLKEEAKEQMRMAMEEKAMAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALVLKEHAIKKINSTILQITCQVCRQHFHPFPKI* | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4678750 | 4681650 | - | CsaV3_1G007390.1 | Csa01g00739 | 515236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00739 | 424 | SMART | c2h2final6 | 136 | 163 | IPR013087 | - | |
Csa01g00739 | 424 | SMART | c2h2final6 | 100 | 130 | IPR013087 | - | |
Csa01g00739 | 424 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Csa01g00739 | 424 | PANTHER | OS03G0310200 PROTEIN | 14 | 419 | IPR039288 | GO:0009630 | |
Csa01g00739 | 424 | Gene3D | Classic Zinc Finger | 35 | 100 | - | - | |
Csa01g00739 | 424 | Coils | Coil | 339 | 401 | - | - | |
Csa01g00739 | 424 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Csa01g00739 | 424 | MobiDBLite | consensus disorder prediction | 193 | 232 | - | - | |
Csa01g00739 | 424 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Csa01g00739 | 424 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Csa01g00739 | 424 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 80 | IPR036236 | - | |
Csa01g00739 | 424 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 14 | 419 | - | - | |
Csa01g00739 | 424 | MobiDBLite | consensus disorder prediction | 307 | 331 | - | - | |
Csa01g00739 | 424 | MobiDBLite | consensus disorder prediction | 188 | 248 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g00739 | Csa01g00488 | CCT | |
Csa01g00739 | Csa01g00488 | ECH | |
Csa01g00488 | Csa01g00739 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00488 | Csa-Chr1:3175342 | Csa01g00739 | Csa-Chr1:4678750 | 6.40E-158 | dispersed | |
Csa01g00739 | Csa-Chr1:4678750 | Csa05g01292 | Csa-Chr5:13726487 | 3.56E-132 | dispersed | |
Csa01g00739 | Csa-Chr1:4678750 | Csa06g03225 | Csa-Chr6:27277593 | 1.31E-70 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30676 | None | None | None | None | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00739 | K25871 | - | csv:101210748 | 764.992 |