Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00746 ATGCCTCTTTGTTTTCATCTCGCTCGTCCATTATTTCTTATTTCAAAATCCACCGATTTACAAAAATCAATAGCTTTGAGAATTTCTCGCAAATCTTTCGTTTCGAAATCGGAGAACTCATCGGTGAAACTAGAAGATTTCTATGTCAGTTTCTTGCAACGGTGTGTTCTAACCTCCGATTCCCGCCATGGATCCGCAATTCATGCGAAGTTCCTCAAAGGGTTTCTTCCATTTTCTCTTTTCTTTCACAACCATGTACTTAACTTTTATGTCAAATGTGGACGTCTATCATATGGCCTGCAACTGTTCGACGAAATGCCTGAGAGAAACGTTGTGTCCTGGTCTGCGATCATTGCTGGGTTCGTCCAACATGGCCGACCCAACGAAGCCCTCTCTCTATTTGGGCGTATGCATTGCGATGGCACGATAATGCCAAACGAGTTCACTCTTGTAAGTGCTCTCCATGCTTGTTCTTTAACTCAGAGGCTGATATGTTCATACCAAATTTATGCATTTATTGTTCGCTTAGGGTATGGGTCGAATGTTTTTCTCATGAATGCGTTCTTAACTGCTCTAATTAGGCATGAGAAATTGCTAGAGGCTTTAGAAGTTTTCGAGAGTTGTTTATCCAAAGATACTGTGTCTTGGAATGCAATGATGGCTGGTTATTTGCAATTAGCATATTTTGAACTGCCGAAGTTTTGGCGACGGATGAATCTCGAGAGCGTTAAGCCTGATAATTTTACATTTGCTAGCATCTTAACTGGATTGGCTGCTCTATCTGAGTTTAGGCTGGGGTTGCAAGTTCATGGTCAGCTTGTGAAAAGTGGCTATGGCAATGACATTTGTGTAGGGAATTCCTTGTGTGATATGTACGTCAAGAATCAGAAGTTGTTAGATGGTTTTAAAGCTTTTGATGAAATGTCTTCAAGTGATGTATGCTCTTGGACCCAAATGGCTGCAGGGTGTCTCCAGTGTGGGGAACCAATGAAAGCTCTTGAGGTCATTTATGAGATGAAAAATGTCGGCGTGAGGTTAAATAAGTTCACCCTTGCAACTGCCTTGAATAGTTGTGCCAATTTGGCCTCCATTGAAGAAGGAAAGAAATTCCATGGATTGAGAATTAAACTTGGAACCGATGTTGATGTTTGTGTTGATAACGCTCTACTTGATATGTATGCAAAATGTGGATGTATGACCAGTGCAAATGTCGTATTTCGTTCGATGGATGAACGATCTGTCGTCTCGTGGACTACTATGATTATGGGATTTGCACATAATGGTCAAACAAAAGAAGCCCTTCAAATCTTTGATGAAATGAGAAAAGGGGAAGCTGAACCTAACCACATCACTTTTATTTGTGTTCTCAATGCTTGTAGCCAAGGAGGTTTCATTGATGAAGCATGGAAATACTTCTCTTCCATGAGTGCCGACCATGGGATTGCACCTTCAGAAGATCACTATGTGTGTATGGTGAATCTATTAGGCCGAGCTGGGTGTATAAAAGAAGCCGAGGATTTGATCCTACAAATGCCATTTCAACCTGGTTCATTGGTCTGGCAAACGTTGCTGGGTGCTTGCTTGGTTCATGGTGACATAGAGACAGGAAAACGAGCAGCCGAGCACGCGTTGAATTTGGATCGAAACGATCCATCGACTTACATCTTGTTATCAAACATGTTTGCTGGTGGTGATAACTGGGACAGTGTTGGAATTTTGAGAGAACTAATGGAAACTAGAGATGTAAAGAAAGTACCTGGATCAAGTTGGATGTCAAACATGAGAAGAACTATTGATTGA 1800 41.44 MPLCFHLARPLFLISKSTDLQKSIALRISRKSFVSKSENSSVKLEDFYVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLAYFELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSWMSNMRRTID* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4741195 4743844 + CsaV3_1G007460.1 Csa01g00746 515243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00746 599 PANTHER OS07G0578800 PROTEIN-RELATED 31 592 IPR045215 GO:0003723|GO:0009451
Csa01g00746 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 483 IPR002885 -
Csa01g00746 599 Pfam PPR repeat family 413 459 IPR002885 -
Csa01g00746 599 Pfam PPR repeat family 109 157 IPR002885 -
Csa01g00746 599 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Csa01g00746 599 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Csa01g00746 599 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Csa01g00746 599 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Csa01g00746 599 TIGRFAM PPR: pentatricopeptide repeat domain 112 142 IPR002885 -
Csa01g00746 599 Gene3D Tetratricopeptide repeat domain 30 166 IPR011990 GO:0005515
Csa01g00746 599 Gene3D Tetratricopeptide repeat domain 167 260 IPR011990 GO:0005515
Csa01g00746 599 Gene3D Tetratricopeptide repeat domain 261 369 IPR011990 GO:0005515
Csa01g00746 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Csa01g00746 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Csa01g00746 599 Gene3D Tetratricopeptide repeat domain 387 597 IPR011990 GO:0005515
Csa01g00746 599 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 31 592 - -
Csa01g00746 599 Pfam E motif 530 591 IPR046848 -
Csa01g00746 599 Pfam PPR repeat 488 511 IPR002885 -
Csa01g00746 599 Pfam PPR repeat 315 344 IPR002885 -
Csa01g00746 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00746 - - - csv:101211489 1217.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00746 Csa-Chr1:4741195 Csa05g02122 Csa-Chr5:24388702 4.23E-18 dispersed
Csa01g00746 Csa-Chr1:4741195 Csa03g01691 Csa-Chr3:12669403 1.76E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00746 Csa_Chr01 FPKM 8.379177 9.760775 8.618171 8.2513 7.697335 7.452544 7.175413 13.872244 12.862735 13.611006