Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00747 ATGTCTTCGTCCGGTGGCAACTCTGGCGACGGAGCTGGCGGTGGCGTCGCCTCCCATCCCCCTCAGCTCTACTTCTGCTATACCTGCAATCGTACGGTAACAATTACTCCCTCGTCATCCTCCGATCTTTTATGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGAAAGTCCAAACCCTAACCCTAGCCCTGTTTCCAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCACCTTTCAGCACCGGTGGCGGTGGAAATGGCGGTTTCCCTATCATATTCTCTACGACATCTTCATCTGGTGGCATTGGCGGTGGGGGTTCTATGATGAATGATCTATCAGCGCTATTGGGAGGTGGTTCTCTTCGATCGTCGTCGTCGTTACAAAACCCTGACGGTTTTAATCCCTTGCTTTTTCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCTTCGGGAGAGGCGTTTCATCCCCCTTCCAATTTCAATCTTGGTGACTACTTCTTTGGCCCCGGCCTTGAGCAGTTGATTCAACAGCTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGGCCATTGAAGGACTTCCAGATATCAAGATTACGGAGGAATTGTTGGCTACGGATTCTTCACAGTGCGCTGTGTGTAAGGATACGTTTGAGCTTGACGAGGTGGCAAAACTGATGCCTTGCAAACACATATATCATGCAGATTGTATAATTCCTTGGTTGGAATTGCATAATTCTTGTCCAGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGAACTCGTGGGTCTTCAGCTCCTAATCGGAGTCAAAGCGAAAGTCAACCCTTTGGGGATTCTTCCACTGGTGGGGAAAATGTTGTCGGAAGCGATCCTAATTCTGACGAGAACTCGCAGACTCAACAAATGGGAGAGCGGAGGGTTAGGAGGATAGCTTTTCCTTGGCCCTTCAGAGGATTTGGTTCAGCTGCTGAGACTAGTAATAGTGGAGGTGGCAACAACAGTGGAAATAACGACGAACCTAGCTCCAGAAATAGGGGAAGCCAGGGTTCTTCCGAGCCAATGCAGGAAGATCTCGATTGA 1137 48.64 MSSSGGNSGDGAGGGVASHPPQLYFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMESPNPNPSPVSNPFLSFTSEAFPPFSTGGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSLRSSSSLQNPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPPSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPDIKITEELLATDSSQCAVCKDTFELDEVAKLMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGSSAPNRSQSESQPFGDSSTGGENVVGSDPNSDENSQTQQMGERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNNDEPSSRNRGSQGSSEPMQEDLD* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4746270 4750299 + CsaV3_1G007470.1 Csa01g00747 515244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00747 378 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Csa01g00747 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 271 IPR013083 -
Csa01g00747 378 MobiDBLite consensus disorder prediction 279 323 - -
Csa01g00747 378 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Csa01g00747 378 Pfam Ring finger domain 223 265 IPR001841 -
Csa01g00747 378 CDD RING-H2_RNF126_like 223 265 - -
Csa01g00747 378 SMART ring_2 224 264 IPR001841 -
Csa01g00747 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 345 - -
Csa01g00747 378 MobiDBLite consensus disorder prediction 340 378 - -
Csa01g00747 378 SUPERFAMILY RING/U-box 212 272 - -
Csa01g00747 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 345 - -
Csa01g00747 378 MobiDBLite consensus disorder prediction 272 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00747 - - K11982 csv:101205252 679.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00747 Csa-Chr1:4746270 Csa05g01448 Csa-Chr5:15741995 2.43E-71 dispersed
Csa04g01718 Csa-Chr4:16573547 Csa01g00747 Csa-Chr1:4746270 1.91E-30 dispersed
Csa04g02600 Csa-Chr4:25481803 Csa01g00747 Csa-Chr1:4746270 9.82E-25 dispersed
Csa05g02459 Csa-Chr5:26440115 Csa01g00747 Csa-Chr1:4746270 1.68E-26 dispersed
Csa05g02990 Csa-Chr5:30206422 Csa01g00747 Csa-Chr1:4746270 9.67E-27 dispersed
Csa07g02062 Csa-Chr7:19940197 Csa01g00747 Csa-Chr1:4746270 3.92E-23 dispersed
Csa01g00745 Csa-Chr1:4739011 Csa01g00747 Csa-Chr1:4746270 9.09E-20 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00747 Csa_Chr01 FPKM 10.584054 11.962007 11.359109 10.42681 19.863586 18.350292 20.185301 16.463787 15.922363 17.642927