Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00750 ATGGGTCGTCAAGCTGTTGCCAAGCTCATAGGGTCGGCCATTAATCGCAAAACTTCTTCATCTTCATCATCATCTTCTGTGTTTTCGCGTGCGGCGTCGCAGATTCGGCATTACTCCGCTGCTCCGTCACCTCCACCGGCAGTTTTTGTTGATAAGAACACTCGCGTTATATGTCAAGGGATCACTGGTAAAAACGGTACATTTCACACAGAGCAGGCCATCGAATATGGCACCAAAATGGTTGGTGGTGTAACGCCAAAGAAGGGTGGAACAGAACACTTGGGGCTTCCTGTTTTTAACTCAGTTGCTGAAGCCAAAGCTGAAACCAAGGCCAATGCATCAGTTATTTATGTTCCCCCGCCATTTGCTGCAGCAGCTATCATGGAGGCAATGGAAGCTGAGTTAGATCTTGTTGTTTGTATTACGGAAGGGATCCCACAACATGATATGGTGCGAGTTAAGGCTGCTTTAAACAAACAATCTAAAACTAGATTGATTGGCCCTAATTGCCCTGGCATTATCAAGCCTGGAGAATGTAAAATCGGAATTATGCCTGGATACATCCACAAACCTGGTCGCATTGGCATAGTATCACGATCTGGTACCTTGACTTATGAAGCTGTTTTTCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGCGTAGGTATTGGAGGGGATCCCTTTAATGGGACAAACTTTGTTGATTGTATCGAGAAGTTCCTTGTTGATCCTCAGACAGAAGGTATTGTTCTAATTGGAGAAATAGGTGGAACTGCTGAAGAGGATGCTGCCGCTTTGATTAAGGAAAGTGGGACTGATAAGCCTATTGTTGGATTCATTGCTGGCCTAACTGCTCCTCCAGGCCGTCGCATGGGTCATGCTGGCGCCATTGTCTCAGGTGGAAAAGGAACAGCCCAAGACAAAATCAAGACACTACGAGAAGCTGGAGTAACGGTGGTCGAGTCACCTGCAAAAATTGGTGTGTCAATGCTTGAAGTTTTCAAACAGAGAGGCCTCGTTAGTTAG 1029 46.06 MGRQAVAKLIGSAINRKTSSSSSSSSVFSRAASQIRHYSAAPSPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLVDPQTEGIVLIGEIGGTAEEDAAALIKESGTDKPIVGFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVSMLEVFKQRGLVS* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4762129 4767431 - CsaV3_1G007500.1 Csa01g00750 515247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00750 342 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 198 227 IPR033847 -
Csa01g00750 342 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 283 296 IPR017440 -
Csa01g00750 342 Gene3D - 47 166 - -
Csa01g00750 342 Pfam CoA-ligase 197 318 IPR005811 GO:0003824
Csa01g00750 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 168 IPR036291 -
Csa01g00750 342 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 7 341 - -
Csa01g00750 342 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 7 341 - -
Csa01g00750 342 SMART CoA_binding_2 49 145 IPR003781 -
Csa01g00750 342 Gene3D - 167 340 IPR016102 -
Csa01g00750 342 PRINTS Succinyl-CoA synthase signature 127 144 - -
Csa01g00750 342 PRINTS Succinyl-CoA synthase signature 223 241 - -
Csa01g00750 342 PRINTS Succinyl-CoA synthase signature 254 267 - -
Csa01g00750 342 PRINTS Succinyl-CoA synthase signature 287 304 - -
Csa01g00750 342 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 46 335 IPR005810 GO:0003824
Csa01g00750 342 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 49 334 IPR005810 GO:0003824
Csa01g00750 342 SUPERFAMILY Succinyl-CoA synthetase domains 169 337 IPR016102 -
Csa01g00750 342 Pfam CoA binding domain 51 144 IPR003781 -
Csa01g00750 342 PIRSF SucCS_alpha 45 338 IPR005810 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00750 K01899 LSC1; succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - csv:101206269 634.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00750 Csa-Chr1:4762129 Csa06g02010 Csa-Chr6:18103290 1.40E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00750 Csa_Chr01 FPKM 65.314537 70.169556 54.144905 52.74292 43.161121 41.833817 44.605385 57.725151 51.841576 61.257946