Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00756 ATGATGAAATCTTTCGACAAAACGCCGGATAGGAACTCGTCTTTTTCTGAACCTGTCAGCTCAATCCACAGTCCTCTTTATTCCGATGGCTCTCCTTCTTCTTCCGGTAACAATAATTCAAAATCAGGGCGTAAGAAACAATTAATCAGGAAACGAGGTGGATTTGTATTTCGGGTATACGAGCATGTTAAGTTGGGGCCTAAATTCTTGGTAACTGCTAAAGGTAAATTGAGATTAGGGGCAAAAATAATACAACAAGGTGGCAGAAAGAACATATTCAAACAGGTTTTTGGAATTGTAGAAGGAGAGCAGCTTTTGAAGGCCTCTCAATGCTACTTATCAACAAGTGCAGGGCCCATTGCTGGGCTTCTTTTCATATCTACAGAGAAAGTTGCTTTCTGCAGTGAGCAAAGTATCACTTTCTCTTCACCAACTGGTGAATTGCTCAAAACACCTTATAAGGTTTTGATACCATTAAAGAAGATCAGAAAAGCCAATCAAAGTGAGAATGTCAATGATCCAGCAAAAAAGTACATCGAAGTGGTGACAGATGACAACTTTGATTTCTGGTTTATGGGATTTTTGAGATATGAAAAGGCATTTACAAATCTTCAGAAGGCCATTTCCATGGCTAACAATTCAATGCAACAGTTCACAGATATATCATGA 669 38.71 MMKSFDKTPDRNSSFSEPVSSIHSPLYSDGSPSSSGNNNSKSGRKKQLIRKRGGFVFRVYEHVKLGPKFLVTAKGKLRLGAKIIQQGGRKNIFKQVFGIVEGEQLLKASQCYLSTSAGPIAGLLFISTEKVAFCSEQSITFSSPTGELLKTPYKVLIPLKKIRKANQSENVNDPAKKYIEVVTDDNFDFWFMGFLRYEKAFTNLQKAISMANNSMQQFTDIS* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4807125 4809674 + CsaV3_1G007560.1 Csa01g00756 515253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00756 222 PANTHER GEM-LIKE PROTEIN 2 14 209 IPR037848 -
Csa01g00756 222 Gene3D - 89 210 IPR011993 -
Csa01g00756 222 MobiDBLite consensus disorder prediction 1 47 - -
Csa01g00756 222 MobiDBLite consensus disorder prediction 7 43 - -
Csa01g00756 222 SMART gram2001c 91 169 IPR004182 -
Csa01g00756 222 Pfam GRAM domain 92 212 IPR004182 -
Csa01g00756 222 PANTHER OSJNBA0038O10.18 PROTEIN 14 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00756 - - - csv:101206983 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00756 Csa-Chr1:4807125 Csa05g01456 Csa-Chr5:15903051 2.94E-68 dispersed
Csa01g00756 Csa-Chr1:4807125 Csa02g02186 Csa-Chr2:19661252 2.31E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g929 . . . . . . . . . Cmo18g00080 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00756 . . . . . . . . . . . . . . Cma18g00104 . . Cpe09g01087 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000142 3 13 4 2 2 7 4 7 7 6 6 6 11 8 8 11 6 2 9 6 8 5 5 6 8 8 6 15 13 9 211
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00756 Csa_Chr01 FPKM 21.896826 21.115221 38.186176 35.924862 94.173286 87.186531 93.650101 19.6502 20.360008 21.375479