Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00765 ATGCCGCCGAGACGATATGCTTTTGGACGGGCCGATGAGGCCACCCACCCCGACTCCATTCGTGCTACCTTAGCTGAGTTCATTTCCACTTTCATCTTCGTCTTTGCTGGCGAAGGCTCCGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTATGGTCACGGAAGTTATGGGCATGGAAGTTACGGCCGAGGAGGGTACAGTTATGGTCACGGTTATGGTAGAAAGGGGACCGACACAGGCAGAGCTGCGTCCGATTTAGTAGTGATAGCGATAGCACACGCGTTTGCGCTGTTCTCGGCGGTGGCAGCGAGCATCAACATATCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCCCTTATCGGAGGGAGGATATCTCTTATTCGTGCATTCTTCTATTGGGTTGCACAGATTTTGGGTGCCATTATCGCTTCACTTCTCTTGAGACTTGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTTTCATCAGGAGTATCGGAATTGCACGGGTTTCTACTAGAGATAATCCTTACATTTGCATTGGTCTACACAGTTTACGCAACAGCAATAGACCCAAAGAGGGGCAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCAGCAAGGGCATTTGGGCCTTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATTGGCCCATTAATCGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTCATTCCCGTTGAACCTCCTCTACATACTCACCAGCCCTTGGCTCCCGAGGATTACTGA 870 51.03 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGHGSYGRGGYSYGHGYGRKGTDTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALIGGRISLIRAFFYWVAQILGAIIASLLLRLATGGMRPMGFFVSSGVSELHGFLLEIILTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLIGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4860621 4863522 + CsaV3_1G007650.1 Csa01g00765 515262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00765 289 CDD MIP 21 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Csa01g00765 289 PANTHER AQUAPORIN-8 82 289 IPR034294 -
Csa01g00765 289 PANTHER - 82 289 - -
Csa01g00765 289 PANTHER - 3 49 - -
Csa01g00765 289 ProSitePatterns MIP family signature. 116 124 IPR022357 -
Csa01g00765 289 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 Pfam Major intrinsic protein 14 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 SUPERFAMILY Aquaporin-like 13 280 IPR023271 -
Csa01g00765 289 TIGRFAM MIP: MIP family channel proteins 25 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa01g00765 289 Gene3D Glycerol uptake facilitator protein. 5 275 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00765 Csa-Chr1:4860621 Csa03g03313 Csa-Chr3:30151604 2.97E-93 dispersed
Csa01g00765 Csa-Chr1:4860621 Csa06g02624 Csa-Chr6:23064934 8.51E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00765 K09873 - csv:101208863 519.62