Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00785 ATGCAGACTTCCGGTTTCAAACGCCTGGGGGATACACCAACGAGGGCCACGACCTTCTGGACCCAAGCAAATGGTCTTCTCAGAAAAAACTTAACCTTCCAGAAACGAAATTTGAGGACAAATTCTCGTCTGATTTTATTCCCATTCATCCTCTGTTCATTGCTCGGTGTAATTCAGACAATAGTCGATAGAACCTTGGATGACCCGTTTATCAGATGTGGTTGTGCTTGTGTTGATACGAATGGAGACGGTAAATGTGAGAAAGTTTGTGGGGTAGAGTACTCAAGTTCGTTACAAGCATCATCCTGCCCCATTCCAAGTCCTCCACAATGGGCTCCTATATTGCAAATGCCTGCTCCTGATTTCCGGGCTGTGAGAACAGATTTTTCTCCATACACAGACTTGCCAAATGAATCATGCAGGGAGTCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAAGAATCGCTCTCTTGGAAATATTCTGGCTGGAAATATGGTCCCAAGTTCTTTGTTTTGGAATTCTTCTGATGCTCTGAATGCTGTATCTCTTAACGTTATGGGATCAGAAACGAAGCCTGGTACAGAAAATTATATTGATTTCGCTTTCTTTTCAAATCTTCCTTTATATTATGTGCAACGTCAGTGTGCGACAGGCTCGACATTGTCAATTCCTCTTTCACTATACTCTCTTGAAAGCAAACAAAAAGTTGCATGTGTTCAAGGCCTACAATTGTGGCGCAATAGTGCTTCACAGGTGAATGATGAGATATACAAAGGTTACGTAAACGGGAATCCCAAGGGGAAAATCAATGAGATTCTTTCAGGCTTTGATTTCTTAAATTCGGATAGGAACAACTTTAATGTGACTATATGGTATAATTCATCTTATAATGGTGGCTCTGGCTTGAGCGTTCTGTTGCGGGTGCCACGCTCGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTAAGTTAGGAGCACGCATAGAGATGCCCTTTCAGTTTGTCAAAGAAATGCCGAAACATGAGACAAAGATGAAGTCGGATTTTTCTTCTCAACTTGGTGCACTATTTTTTACGTGGGTCATCCTCCAGCCTTTTCCAGTTATCTTGACATCGTTGGTAACTGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGGCGATTTCATATGCTTATTTTCTCGCAATTTATTCATTATACATGTTTTTTTTCGTGTTGTTTGGTTCAGTTGTAGGGTTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTAGTGTTTTATCTCTTGTTTATAAATTTGCAAGTCTCCATTGCCTTTCTAATGGCTAGCACGTTTTCAGATGTCAAGACAGCTGAAGTTTCGGCATATATTTGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAATTTTTTCTTGAAGATCCTTCATTCCCACATGGCTGGATTATATTGATGGAGTTATATCCTGGATTTTTGCTATATCGTGGGTTGTATGAGTTTGCATTTTATTCTACCAGTGGGAATCAAGTAGGGACTTCTGGGATGCGATGGGGAGATTTCATTGATAGTACCAATGGAATGAGAGAAGTCTTTGTCATTATGTTTTTTGAGTGGATAGTGGTGCTTCTAGTTGGATATTATATCGATCAAGCTATATCATCGGGAAGTTGGAAGCATCCATTGTTTTTCCTTCAAAGACACGACAAAAAACCTGCACCTCAGAATCTTGTTCCGGAGAGGCAAGGATCAAAAGTTGTGGTTCAGATTGATAAACCTGATGTCAGAGCAGAGAGGGAGAAGGTCGAACAGTTGATAAAGGATAGACATCCAAGTCATGGCATCATATGTGACCATATCAAAAAGGTGTATCCAGGAAGGGATGGGAACCCCGAGAAGTTTGCAGTTAAAGGACTGTCTCTTGCTATAGACCGAGGAGAATGCTTTGGGATGCTAGGTCCTAATGGTGCGGGAAAAACCTCCTTTATCAGTATGATGATTGGTCTTACAAAACCAACCGCTGGAACAGCCTTTGTTGAAGGTCTGGACATAAGGACTGAGATGAATGGCGTATATGCAAGCATGGGCGTTTGTCCACAGCACGACCTGCTATGGGAAACCTTAACAGGAAGGGAACACCTACTCTTTTATGGCAGACTCAAGAACTTAGAAGGTTCTGCTTTAGTACAAGCAGTGGAAGAATCTCTCAAGGATGTCAACCTCTTCAAAGGAGGAGTAGCAGACAAACAAGCTGGGATGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTCGCTATATCACTAATTGGATATCCTAAAGTTGTTTATATGGATGAGCCAAGCACTGGCCTAGATCCAGCTTCAAGAAAAACTTTATGGAATGCTGTGAAGCGTGCAAAGAAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCAGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGATGCCTCCAATGTGTTGGACATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGTTTATGTATTTACAATGACAACATCCTCTGATCATGAGGGATATGTTGAGGACATGGTGAAGCGATTAGCCTCTGGAGCAAAGAAGATATACCATTTATCTGGAACACAAAAATTTGAGCTTCCAAAACATGATGTTCGGATAGCTGAAGTGTTTTTAGCAGTTGAAGAGGCCAAAAGCAGATTTACGGTTTTGGCTTGGGGTTTGTCTGATACCACTTTAGAAGACGTCTTTATCAAAGTTGCTAATTCAGCCAAGTCTTCACATACGCTTTCTTGA 2856 41.39 MQTSGFKRLGDTPTRATTFWTQANGLLRKNLTFQKRNLRTNSRLILFPFILCSLLGVIQTIVDRTLDDPFIRCGCACVDTNGDGKCEKVCGVEYSSSLQASSCPIPSPPQWAPILQMPAPDFRAVRTDFSPYTDLPNESCRESMSCPVTMLFTGKNRSLGNILAGNMVPSSLFWNSSDALNAVSLNVMGSETKPGTENYIDFAFFSNLPLYYVQRQCATGSTLSIPLSLYSLESKQKVACVQGLQLWRNSASQVNDEIYKGYVNGNPKGKINEILSGFDFLNSDRNNFNVTIWYNSSYNGGSGLSVLLRVPRSVNLASNGYLKFKLGARIEMPFQFVKEMPKHETKMKSDFSSQLGALFFTWVILQPFPVILTSLVTEKQQKLRIMMKMHGLGDGPYWAISYAYFLAIYSLYMFFFVLFGSVVGLKFFTMNDYSIQLVFYLLFINLQVSIAFLMASTFSDVKTAEVSAYICVFGTGLLGGFLFQFFLEDPSFPHGWIILMELYPGFLLYRGLYEFAFYSTSGNQVGTSGMRWGDFIDSTNGMREVFVIMFFEWIVVLLVGYYIDQAISSGSWKHPLFFLQRHDKKPAPQNLVPERQGSKVVVQIDKPDVRAEREKVEQLIKDRHPSHGIICDHIKKVYPGRDGNPEKFAVKGLSLAIDRGECFGMLGPNGAGKTSFISMMIGLTKPTAGTAFVEGLDIRTEMNGVYASMGVCPQHDLLWETLTGREHLLFYGRLKNLEGSALVQAVEESLKDVNLFKGGVADKQAGMYSGGMKRRLSVAISLIGYPKVVYMDEPSTGLDPASRKTLWNAVKRAKKDRAIILTTHSMEEAEVLCDRIGIFVDGCLQCVGHPKELKARYGGVYVFTMTTSSDHEGYVEDMVKRLASGAKKIYHLSGTQKFELPKHDVRIAEVFLAVEEAKSRFTVLAWGLSDTTLEDVFIKVANSAKSSHTLS* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4959845 4967744 - CsaV3_1G007850.1 Csa01g00785 515282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00785 951 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
Csa01g00785 951 CDD ABC_subfamily_A 629 854 - -
Csa01g00785 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 858 IPR027417 -
Csa01g00785 951 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 15 950 - -
Csa01g00785 951 Pfam ABC-2 family transporter protein 252 558 - -
Csa01g00785 951 Gene3D - 618 889 IPR027417 -
Csa01g00785 951 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 866 IPR003439 GO:0005524
Csa01g00785 951 SMART AAA_5 659 842 IPR003593 -
Csa01g00785 951 Pfam ABC transporter 651 795 IPR003439 GO:0005524
Csa01g00785 951 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 15 950 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00785 - - - csv:101218105 1903.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00785 Csa01g00221 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00221 Csa-Chr1:1425089 Csa01g00785 Csa-Chr1:4959845 0 dispersed
Csa01g00785 Csa-Chr1:4959845 Csa04g01087 Csa-Chr4:8949968 2.74E-62 dispersed
Csa01g01567 Csa-Chr1:11302622 Csa01g00785 Csa-Chr1:4959845 4.41E-08 transposed
Csa02g02583 Csa-Chr2:22537653 Csa01g00785 Csa-Chr1:4959845 1.71E-14 transposed
Csa04g01199 Csa-Chr4:10486445 Csa01g00785 Csa-Chr1:4959845 2.09E-10 transposed
Csa01g00220 Csa-Chr1:1416507 Csa01g00785 Csa-Chr1:4959845 3.51E-83 wgd
Csa01g00785 Csa-Chr1:4959845 Csa05g02977 Csa-Chr5:30108267 6.63E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00785 Csa_Chr01 FPKM 0.85034 0.510447 25.656534 26.261091 0.0 0.0 0.424486 0.680643 0.205838 0.335388