Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00787 ATGGACGCTGCTGCTGCTTTTGGCCGTCCAAGGCCTGTCGTCAAGACCGAGAAACCTCCCCTTCGCGACCTTAGTGACAACGATCGGAGTTCTCCCTCTAAACAACAACAACAACTTCTCCTCGTTAAGAGAGGGAACAACCATGCAAAACAAGAACATGATACTACTGAAGATAAAACAAGTTGTTCATCTGATCAAAAGGATTTGAGCTGCATCAAACTGCAGGAAGATCAATTGGAATCTGCTCGAGCAGAAATGGGGGAAGTAAGAGAAGAAAACCAAAGACTAAAGCAGAGCTTAACCCAAATCATGAAGGATTATGAAGCTTTGAAAATGCAATTCCTGGGGATTGTTGGACGAGACTGTAAGAAAGTACAAGACGAAGACAACGACGTGAATAAGGAACAACAACAACAACAACACGATGACGATCAAATCGAGCTGGTTTCACTTTCTCTGGGGAGATTTCCGGTGTCGGAGAAGAAAAAAATAGTCGATGAGAAAAGCTGTATGAATATCATCGGTGGTGACCACAACGAAGAAGCCGCCTGTAAAGAGGCTTTATCTCTCGGTTTGAACTGCAAATTTGAACGGGAAGAATCAATGATGGCCGTCGCTAAAGAAGTCGATTCTCCAAATAGTTTTGATCATGAGTCGACGAAGGAAGAAGCTGGAGAGACAAATTGGCCATCTAAAGGTGGGAAGACAATGAGAAGTGTTGAAGATGATGTTACACCGCAGAATCCACCCAAACGTGCTAGAGTTTGCGTTAGAGCCCGATGTGAAACCGCCACGATGAACGATGGTTGTCAATGGAGAAAATATGGGCAAAAGATAGCAAAAGGAAATCCATGTCCACGAGCATATTATCGTTGCACAGGTTCGCCAACATGTCCTGTAAGAAAACAAGTCCAAAGATGCGCTGACGACATGTCGATTTTGATTACCACCTATGAAGGTAATCATAACCATCCATTACCTGCCTCCGCCAACGCCATGGCCTCCACCACCTCTGCTGCTGCCTCCATGCTCCTCTCTGGCTCCACCACCTCCGCAACGGCGGCCTCCTCCTCGTCCACCGCCTCGAATAGTCTCCATGGCCTAAACTTTTACCCAAATAATTCTAAACCCAATTTTTACTTACCCAACAGTAACTCCTCTATAATTTCATCCACTTCCCCAACTCACCCCACAATCACTTTAGACCTCACTTCAAATCCTTCTTCCTCTCCTTCAAGTTCCTCAACCCATTTTGGTAAATTCACATCTAATTTTCCCAATTCTCGTTACCCTTTTACTGGACAACTCGATTTTGGATCTTCTAGAAACAACGTGTTATCATGGAATAACGGTCTTCTTAGTTACAACAGAAATAACCACCCTACTACTACTACTACAACGGCCAACAATATCTACCAAAACTACATCCAACAACAACAACGAAACCCCACCACATCACTACAACATCAACAACCACCTTTACCTGACACCATTGCTGCCGCTACCAAGGCCATCACGGCCGATCCGAGCTTTCAATCTGCTCTCGCTGCCGCTCTTACATCGATCATTGGCACCGGGGGTGCTAGTGCAAGTGCTGGACTCACCAAGTCATTGTCAGGAAGAGGCGAACAATCATTGTTTCAATTGATGACGACGGCAGCTACTACAAATAAAGGAAATGGATGTGGGACAAGCTTTTTGAACAACATTACGACAACGACGACCACCACAAGTAATTCACCACCAACGGGGAATATGGTGTTTGTTCCAACAAATTCGTTGCCGTTTTCGAATTCGAAAAGTGCTTCGGCTTCTCCAGGTGATCATATTGATCTTACCAATTAA 1845 44.82 MDAAAAFGRPRPVVKTEKPPLRDLSDNDRSSPSKQQQQLLLVKRGNNHAKQEHDTTEDKTSCSSDQKDLSCIKLQEDQLESARAEMGEVREENQRLKQSLTQIMKDYEALKMQFLGIVGRDCKKVQDEDNDVNKEQQQQQHDDDQIELVSLSLGRFPVSEKKKIVDEKSCMNIIGGDHNEEAACKEALSLGLNCKFEREESMMAVAKEVDSPNSFDHESTKEEAGETNWPSKGGKTMRSVEDDVTPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSTTSATAASSSSTASNSLHGLNFYPNNSKPNFYLPNSNSSIISSTSPTHPTITLDLTSNPSSSPSSSSTHFGKFTSNFPNSRYPFTGQLDFGSSRNNVLSWNNGLLSYNRNNHPTTTTTTANNIYQNYIQQQQRNPTTSLQHQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGTGGASASAGLTKSLSGRGEQSLFQLMTTAATTNKGNGCGTSFLNNITTTTTTTSNSPPTGNMVFVPTNSLPFSNSKSASASPGDHIDLTN* 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4979523 4983223 - CsaV3_1G007870.1 Csa01g00787 515284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00787 614 Pfam WRKY DNA -binding domain 267 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00787 614 SUPERFAMILY WRKY DNA-binding domain 259 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00787 614 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 50 609 - -
Csa01g00787 614 MobiDBLite consensus disorder prediction 210 251 - -
Csa01g00787 614 MobiDBLite consensus disorder prediction 46 68 - -
Csa01g00787 614 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00787 614 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00787 614 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 609 IPR044810 GO:0003700
Csa01g00787 614 Gene3D WRKY domain 251 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00787 614 MobiDBLite consensus disorder prediction 1 68 - -
Csa01g00787 614 MobiDBLite consensus disorder prediction 15 29 - -
Csa01g00787 614 MobiDBLite consensus disorder prediction 210 225 - -
Csa01g00787 614 Coils Coil 72 113 - -
Csa01g00787 614 MobiDBLite consensus disorder prediction 30 44 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00787 Csa01g00218 CCT
Csa01g00787 Csa01g00218 ECH
Csa01g00218 Csa01g00787 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00787 Csa-Chr1:4979523 Csa07g00347 Csa-Chr7:2571163 4.35E-56 dispersed
Csa02g02427 Csa-Chr2:21438787 Csa01g00787 Csa-Chr1:4979523 2.86E-23 dispersed
Csa01g00218 Csa-Chr1:1407016 Csa01g00787 Csa-Chr1:4979523 2.98E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30678 PF03106 WRKY 5.90E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00787 - - csv:101218344 1058.13