Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00790 ATGAGAGAGACAAAAACCACCATTGTTGGGATTAAACTTCTAATGATATTTGGTTTTGTAATGATATTTCCAACACTAAAGGCTAATATTGCAGATTTTGATGAAGTTTGGCAGAAAAGAGCTATAGAAGCACAAAAAGCTTCCTTTGAGGCCTACGAACCCCATCCAGAAGAAGAAACTAATAATTTCAACAAGCAAGTTCATAGATCTTTAGATGGTGGAAATAACACAAGGAGACATTTGAGGAAGTACACTGGTCCATGTTTAGCCACGAATCCGATTGATCGATGCTGGAGATGCGATAGAAATTGGGCTAGAAACCGTAAGAAACTAGCTGATTGTGCCCTTGGTTTCGGTCGTCGAACGACCGGAGGCAAAGATGGAAAGATTTACGTGGTCCGAGATTCAAGTGATAATGACTTGGTGAATCCTAAACCAGGAACCTTGCGCCATGCTGTGATTCAGGAGAGACCTCTTTGGATTATATTTGCTCATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAGTGACTGATGATAAAACATTAGATGGGCGAGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAAGAATATAATCATCCATAATCTTCACATTCATGACATCAAGGCTGGCAATGGAGGCATGATAAGAGATTCGGTGAGCCACTATGGATTCCGAACACGGAGTGATGGTGATGGAATCTCGATGTTCGGAGCCTCGAGGGTTTGGATCGATCATGTTTCAATGTCTAATTGTCAAGATGGACTAATAGATGCAGTCATGGCATCTACTGCCATTACCATTTCCAACTGCCACTTCACCCACCATAATGATGTGATTTTATTAGGTGCAAGTAATGGCTACTCGAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGATTTATCCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATCGGCGGCAGCCACAACCCCACCATTATCAGCCAGGGGAACCGTTTCATTGCTCCACCAAATCCAAATTGCAAAGAGGTGACGAAAAGGGTGTATGCACCGGAAAGCGAATGGAGATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTCTTCATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGATGTTATCCATTCGAAACCCGGGACCTTCGTCACAAGGCTTACACGATTTGCAGGTCCTCTGAAATGTAAAAAGAATCAACCCTGTTAG 1320 42.73 MRETKTTIVGIKLLMIFGFVMIFPTLKANIADFDEVWQKRAIEAQKASFEAYEPHPEEETNNFNKQVHRSLDGGNNTRRHLRKYTGPCLATNPIDRCWRCDRNWARNRKKLADCALGFGRRTTGGKDGKIYVVRDSSDNDLVNPKPGTLRHAVIQERPLWIIFAHDMVIRLSEELIVTDDKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGMIRDSVSHYGFRTRSDGDGISMFGASRVWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVILLGASNGYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNCKEVTKRVYAPESEWRSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCKKNQPC* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5004584 5006591 - CsaV3_1G007900.1 Csa01g00790 515287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00790 439 MobiDBLite consensus disorder prediction 52 78 - -
Csa01g00790 439 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570
Csa01g00790 439 SUPERFAMILY Pectin lyase-like 81 433 IPR011050 -
Csa01g00790 439 Gene3D - 91 432 IPR012334 -
Csa01g00790 439 PANTHER PECTATE LYASE 12 439 - -
Csa01g00790 439 SMART amb_all 166 363 IPR002022 -
Csa01g00790 439 Pfam Pectate lyase 177 357 IPR002022 -
Csa01g00790 439 PANTHER PECTATE LYASE 18-RELATED 12 439 IPR045032 GO:0030570
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Csa01g00790 439 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00790 Csa-Chr1:5004584 Csa06g02231 Csa-Chr6:20103120 0 dispersed
Csa01g00790 Csa-Chr1:5004584 Csa03g03864 Csa-Chr3:34017655 0 wgd
Csa01g00790 Csa-Chr1:5004584 Csa05g02422 Csa-Chr5:26233901 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00790 K01728 - csv:101218812 914.064