Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00793 ATGGCGGGCCGGAGAGTCTACGGCGGCGACGACGGTGGTAGTATAAGTGGTGGTTCTTCTAATCATAGTGTTTTACTTCAGAATCGTTGTGGGTCTTTTGCTTCTGAGCCTCTTAATGCTCTGTTCCTTTCTGGGTCTTCTTCTTCTTCCTCCCCTTCTCTGCTTGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTAGATAGTGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCATCCTGAAAAAAAGAGGCGATTAACCGTTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAGCCAGAAAGGAAAGTTCAATTAGCGAAGGACCTCGGTCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCTCGGTGGAAAACTAAACAGCTGGAGAAGGACTACGAGGCTCTTCAATCCAGCTATGGAAGCCTTAAGGTTGACTATGAAAACCTACTCAAGGAGAAGGATTCACTAAAAGCTGAGATTCTTCTCCTAACAGACAAGCTGCTACACAAAGAAAAAGAAAGAGGAAACTCTGTGCTGTCTGAAGTTGACAAATTTGGTGAAGAATTACCACACAATCTGGTTGCTGATTCAAATTTGGAGGATGAAGTTTCCAAATCTTCAAAGCTGGGTTGTAAGCAAGAGGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCATTCTTCACTTCTAGAGCCTGGAGATTCTTCCTATATTTTCGATCCTGATCAGTCCGACTTATCGCAGGACGAAGAAGATAACTTGGGAAGGAATCTATTGCCTCCTTATATCTTCCCAAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTTGTGA 1005 43.88 MAGRRVYGGDDGGSISGGSSNHSVLLQNRCGSFASEPLNALFLSGSSSSSSPSLLGSRSMMSFEDIRGGNGSNRSFFCPLDSEDNGDEDLDDYFHHPEKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDKLLHKEKERGNSVLSEVDKFGEELPHNLVADSNLEDEVSKSSKLGCKQEDISSVKSDIFDSDSPHYTDGVHSSLLEPGDSSYIFDPDQSDLSQDEEDNLGRNLLPPYIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWSL* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5021575 5024813 + CsaV3_1G007930.1 Csa01g00793 515290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00793 334 Coils Coil 167 194 - -
Csa01g00793 334 Pfam Homeobox associated leucine zipper 154 195 IPR003106 GO:0006355|GO:0043565
Csa01g00793 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 22 331 IPR045224 GO:0003700
Csa01g00793 334 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Csa01g00793 334 PRINTS Lambda-repressor HTH signature 125 134 IPR000047 GO:0003677
Csa01g00793 334 PRINTS Lambda-repressor HTH signature 134 150 IPR000047 GO:0003677
Csa01g00793 334 Pfam Homeodomain 99 152 IPR001356 GO:0003677
Csa01g00793 334 Gene3D - 94 161 - -
Csa01g00793 334 CDD homeodomain 99 155 IPR001356 GO:0003677
Csa01g00793 334 SUPERFAMILY Homeodomain-like 84 156 IPR009057 -
Csa01g00793 334 SMART HOX_1 97 158 IPR001356 GO:0003677
Csa01g00793 334 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Csa01g00793 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 22 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00793 - - - csv:101215160 632.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00793 Csa-Chr1:5021575 Csa06g03138 Csa-Chr6:26787699 1.63E-40 dispersed
Csa03g03923 Csa-Chr3:34379311 Csa01g00793 Csa-Chr1:5021575 5.13E-44 transposed
Csa04g00524 Csa-Chr4:3446253 Csa01g00793 Csa-Chr1:5021575 1.25E-26 transposed
Csa05g02906 Csa-Chr5:29571581 Csa01g00793 Csa-Chr1:5021575 1.18E-44 transposed
Csa01g00793 Csa-Chr1:5021575 Csa05g02414 Csa-Chr5:26176585 2.46E-35 wgd
Csa01g00793 Csa-Chr1:5021575 Csa05g02973 Csa-Chr5:30044255 2.75E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30679 PF00046 Homeodomain 1.00E-16 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00793 Csa_Chr01 FPKM 1.849899 1.688504 29.315996 26.229546 11.885771 10.466431 11.562684 4.662643 4.680927 3.683304