Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00795 ATGGGTGTGCTCGTTTTGGTTGTTTCATCGCTTTTACTATCAACCCTTTTCAGCATTTGTACTTTTGCTCTCACCCCAGATGGCTTAACGTTGTTGGAAATTAGAAGAGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCGGATGAGTTTCCCTGTAAATGGCCTGGTATATCTTGTCATCCAGAGGACCAACGGGTTAGCTCAATTAACTTACCTTACATGCAACTTGGAGGGATCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAGAGACTTGCACTTCATGAAAATGGCTTACATGGAAATATTCCTAGCGAAATCACCAAATGTACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTTCAAGGTGGCATACCTTCTGATATCGGAAGCCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATGCGTTAAAGGGTGCTATTCCATCATCCATTGGTCAACTCTCGCTTTTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTCGGAGTTCTAAGCACATTTGGAAGCAATTCGTTCATTGGAAATCTAGATCTCTGTGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGCGATGAAGCTTCTGTTCCTATGAAAAAGTCTTCACACTACATCAAAGGGGTATTAATTGGTGCAATGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCCTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGTCAAGAGATATACAGAAGTAAAAAAACAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCATGGTGACCTACCGTACCCATCATGTGAGATTATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCAGGAGGATTTGGTATTGTATACCGGATGGTCATGAATGATTGTGGAACCTTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTCGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGCTACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTCTTGCATGAACATGGACCAGAAAGACAGCCTTTGGATTGGAGAGCTCGTCTTAGGATAGCCTTTGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTACATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAACTTGGTGCCCCATGTATCTGACTTTGGACTGGCCAAGCTTTTGGTTGACGATGATGCTCATGTCACAACTGTAGTTGCTGGAACTTTTGGTTATTTGGCTCCAAGTGCTCATTAG 1458 41.84 MGVLVLVVSSLLLSTLFSICTFALTPDGLTLLEIRRAFNDSKNLLGDWEASDEFPCKWPGISCHPEDQRVSSINLPYMQLGGIISPSIGKLSRLQRLALHENGLHGNIPSEITKCTQLRALYLRSNYLQGGIPSDIGSLSALTILDLSSNALKGAIPSSIGQLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPMKKSSHYIKGVLIGAMSTMGVALVVLVPFLWIRWLSKKERAVKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPERQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLVPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPSAH* 486
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 5031577 5036265 - CsaV3_1G007950.1 Csa01g00795 515292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00795 485 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Csa01g00795 485 Gene3D Phosphorylase Kinase; domain 1 267 386 - -
Csa01g00795 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Csa01g00795 485 SUPERFAMILY L domain-like 26 206 - -
Csa01g00795 485 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 482 - -
Csa01g00795 485 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 482 - -
Csa01g00795 485 ProSiteProfiles Protein kinase domain profile. 311 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00795 485 Pfam Protein kinase domain 313 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00795 485 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524
Csa01g00795 485 Gene3D Transferase(Phosphotransferase) domain 1 387 485 - -
Csa01g00795 485 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Csa01g00795 485 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Csa01g00795 485 SMART serkin_6 311 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00795 485 SUPERFAMILY Protein kinase-like (PK-like) 291 482 IPR011009 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa01g00795 Csa01g00213 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00795 Csa-Chr1:5031577 Csa04g02769 Csa-Chr4:26547824 1.23E-149 dispersed
Csa01g00213 Csa-Chr1:1379747 Csa01g00795 Csa-Chr1:5031577 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77764 PF00069 Pkinase 6.80E-31 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00795 - - csv:101219279 942.569