Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00795 | ATGGGTGTGCTCGTTTTGGTTGTTTCATCGCTTTTACTATCAACCCTTTTCAGCATTTGTACTTTTGCTCTCACCCCAGATGGCTTAACGTTGTTGGAAATTAGAAGAGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCGGATGAGTTTCCCTGTAAATGGCCTGGTATATCTTGTCATCCAGAGGACCAACGGGTTAGCTCAATTAACTTACCTTACATGCAACTTGGAGGGATCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAGAGACTTGCACTTCATGAAAATGGCTTACATGGAAATATTCCTAGCGAAATCACCAAATGTACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTTCAAGGTGGCATACCTTCTGATATCGGAAGCCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATGCGTTAAAGGGTGCTATTCCATCATCCATTGGTCAACTCTCGCTTTTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTCGGAGTTCTAAGCACATTTGGAAGCAATTCGTTCATTGGAAATCTAGATCTCTGTGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGCGATGAAGCTTCTGTTCCTATGAAAAAGTCTTCACACTACATCAAAGGGGTATTAATTGGTGCAATGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCCTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGTCAAGAGATATACAGAAGTAAAAAAACAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCATGGTGACCTACCGTACCCATCATGTGAGATTATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCAGGAGGATTTGGTATTGTATACCGGATGGTCATGAATGATTGTGGAACCTTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTCGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGCTACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTCTTGCATGAACATGGACCAGAAAGACAGCCTTTGGATTGGAGAGCTCGTCTTAGGATAGCCTTTGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTACATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAACTTGGTGCCCCATGTATCTGACTTTGGACTGGCCAAGCTTTTGGTTGACGATGATGCTCATGTCACAACTGTAGTTGCTGGAACTTTTGGTTATTTGGCTCCAAGTGCTCATTAG | 1458 | 41.84 | MGVLVLVVSSLLLSTLFSICTFALTPDGLTLLEIRRAFNDSKNLLGDWEASDEFPCKWPGISCHPEDQRVSSINLPYMQLGGIISPSIGKLSRLQRLALHENGLHGNIPSEITKCTQLRALYLRSNYLQGGIPSDIGSLSALTILDLSSNALKGAIPSSIGQLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPMKKSSHYIKGVLIGAMSTMGVALVVLVPFLWIRWLSKKERAVKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPERQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLVPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPSAH* | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5031577 | 5036265 | - | CsaV3_1G007950.1 | Csa01g00795 | 515292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00795 | 485 | Pfam | Leucine rich repeat | 117 | 174 | IPR001611 | GO:0005515 | |
Csa01g00795 | 485 | Gene3D | Phosphorylase Kinase; domain 1 | 267 | 386 | - | - | |
Csa01g00795 | 485 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 433 | 445 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00795 | 485 | SUPERFAMILY | L domain-like | 26 | 206 | - | - | |
Csa01g00795 | 485 | PANTHER | REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED | 35 | 482 | - | - | |
Csa01g00795 | 485 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 35 | 482 | - | - | |
Csa01g00795 | 485 | ProSiteProfiles | Protein kinase domain profile. | 311 | 485 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00795 | 485 | Pfam | Protein kinase domain | 313 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00795 | 485 | ProSitePatterns | Protein kinases ATP-binding region signature. | 317 | 340 | IPR017441 | GO:0005524 | |
Csa01g00795 | 485 | Gene3D | Transferase(Phosphotransferase) domain 1 | 387 | 485 | - | - | |
Csa01g00795 | 485 | Pfam | Leucine rich repeat N-terminal domain | 26 | 63 | IPR013210 | - | |
Csa01g00795 | 485 | Gene3D | Ribonuclease Inhibitor | 26 | 211 | IPR032675 | - | |
Csa01g00795 | 485 | SMART | serkin_6 | 311 | 485 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00795 | 485 | SUPERFAMILY | Protein kinase-like (PK-like) | 291 | 482 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g00795 | Csa01g00213 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00795 | Csa-Chr1:5031577 | Csa04g02769 | Csa-Chr4:26547824 | 1.23E-149 | dispersed | |
Csa01g00213 | Csa-Chr1:1379747 | Csa01g00795 | Csa-Chr1:5031577 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77764 | PF00069 | Pkinase | 6.80E-31 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00795 | - | - | csv:101219279 | 942.569 |