Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00805 ATGTTTCTCTTCTTCAGTAGTCTAAAGAACAGCTCAACTCAGGCACAGCTTAACCACAACACAACTACAGGGATGTGGATGGGGGCAGCTTCAATGGCAGGTTCATGGGTAGCAGCTGGTCCAACAATTGCAAGCTTCATGTTTGTTTGGGCTATGATTCAACAATATTGCCCACAAGCAGTTCTTCGTTTCTTCAAGAAATACTGGCGTAGACTCATGAACTACTTCCATCCTTACATACAGATCTCCATCCATGAATTTGCTGGTGAACGTCTTAAACGTAGTGAAGCTTTCATTGCAATTGAATCATATCTCAGCAAGAATTCATCCAATACAGCCAAAAGACTCAAAGCTGAGATAGGAAAAGACAGCACAAATTTGGTGTTCAGTATGGATGATCATGAAAAAGTGACTGATGAATTTCAAGGAGTGAAAGTATGGTGGGTTTTAAACAGAACAGGTTCATCAACAAATCCTGATAATTCGTATCCCAATCCTGATAAGAGATATTATACACTCACTTTCCACAAGAATCACAGAAGTTTAATTACGGAACCATATTTGAAGTATGTGTTGAGTGAAGGGAAAGAAATTAGAGTAAGAAACAGGCAAAGGAAGCTTTATACCAATGGTTCTGGTGGAAGATGGAGTTACAGCCATACTATGTGGAGTCACATAGTGTTTGAGCACCCTGCAACATTTGACACCATAGGAATGGAAGCAAAGAAAAAGCAAGAGATTATAGATGATTTGCAGACCTTTACAAGCAGTAAGGATTTTTATGCTCGAATTGGGAAGGCTTGGAAACGTGGGTATCTTCTATATGGTCCACCAGGAACAGGGAAATCAACTATGATTGCTGCAATGGCAAATCTACTGAACTACGATATTTATGACTTGGAACTCACTGCAGTGAAAAACAACACAGAGCTTAGGAAACTTTTGATTGAGACTACCAGCAAATCGATAATCGTGATTGAGGATATCGATTGCTCGCTTGATTTAACGGGGCAGAGGAAGAAGAAAGAAGAGAAGTTGAAGGATGATGAGAAAGAAAAACCTTCCAAAGAATCTTCCCATAAAGAAGATGAGAGCAGTAGTAAAGTTACTTTGTCCGGATTGTTGAATTTCATTGATGGAATATGGTCAGCTTGTGGTGGGGAAAGGCTTATTGTTTTCACTACTAATTATGTAGAGAAACTTGATCCAGCACTTATCAGAACTGGTCGGATGGATAAACATATTGAGCTTTCTTATTGTAGTTTTGAGTCATTTCTAGTGCTGGCGAAGAATTACTTGAATCTCGAAACTCATCCATTATTTGATCAGATCAAAGAACTGATTGAAGATGTCAATATCACACCCGCTGATGTTGCAGAGAACCTCATGCCCAAGTCTCCAAAAGATGACCTTGAGAAACGTATTCACAAATTAATTCAAACTTTGCAACAGGCAAAGGAAGCAGCAATAGTTGAGGAATCTCAAGAAGCAAATACAGCGGAATCAACCACAACCTATCTTCAGTCACAAACTGAAGGTGAACGCTCATCTTCTAGTTCAATTTAA 1566 39.21 MFLFFSSLKNSSTQAQLNHNTTTGMWMGAASMAGSWVAAGPTIASFMFVWAMIQQYCPQAVLRFFKKYWRRLMNYFHPYIQISIHEFAGERLKRSEAFIAIESYLSKNSSNTAKRLKAEIGKDSTNLVFSMDDHEKVTDEFQGVKVWWVLNRTGSSTNPDNSYPNPDKRYYTLTFHKNHRSLITEPYLKYVLSEGKEIRVRNRQRKLYTNGSGGRWSYSHTMWSHIVFEHPATFDTIGMEAKKKQEIIDDLQTFTSSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDIYDLELTAVKNNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKEEKLKDDEKEKPSKESSHKEDESSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRTGRMDKHIELSYCSFESFLVLAKNYLNLETHPLFDQIKELIEDVNITPADVAENLMPKSPKDDLEKRIHKLIQTLQQAKEAAIVEESQEANTAESTTTYLQSQTEGERSSSSSI* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5089000 5092159 - CsaV3_1G008050.1 Csa01g00805 515302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00805 521 CDD AAA 269 419 - -
Csa01g00805 521 Pfam ATPase family associated with various cellular activities (AAA) 273 418 IPR003959 GO:0005524|GO:0016887
Csa01g00805 521 Gene3D - 224 415 IPR027417 -
Csa01g00805 521 Coils Coil 468 488 - -
Csa01g00805 521 Gene3D - 416 472 - -
Csa01g00805 521 MobiDBLite consensus disorder prediction 493 521 - -
Csa01g00805 521 Pfam Domain associated at C-terminal with AAA 58 150 IPR025753 -
Csa01g00805 521 PANTHER ATP BINDING PROTEIN 35 515 - -
Csa01g00805 521 MobiDBLite consensus disorder prediction 342 365 - -
Csa01g00805 521 ProSitePatterns AAA-protein family signature. 389 407 IPR003960 GO:0005524|GO:0016887
Csa01g00805 521 SMART AAA_5 268 421 IPR003593 -
Csa01g00805 521 MobiDBLite consensus disorder prediction 495 521 - -
Csa01g00805 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 466 IPR027417 -
Csa01g00805 521 PANTHER BCS1 AAA-TYPE ATPASE 35 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00805 - - - csv:101216763 996.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00803 Csa-Chr1:5082799 Csa01g00805 Csa-Chr1:5089000 0 dispersed
Csa01g00805 Csa-Chr1:5089000 Csa05g02958 Csa-Chr5:29893165 0 dispersed
Csa01g00804 Csa-Chr1:5085494 Csa01g00805 Csa-Chr1:5089000 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006739 0 1 0 0 0 2 1 2 2 2 1 2 1 1 3 1 2 0 1 2 2 1 2 2 2 2 1 1 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00805 Csa_Chr01 FPKM 8.492069 8.096613 4.253822 4.541938 6.50738 6.714538 6.544237 0.514257 0.597787 0.488137