Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00808 ATGGCGACAAAACGTTCATTCACCAGTTTTGTAGAACAAGAGCTGGGACAGTTTCCACATTTTGTAGTGTGTGCAGTTCTTGAATGGGTTCTCATAATTTTGCTTTTCATTGATGGGATTGTTACATTTTTGGCCAACGAATTCGCTAAGTTCTTTGAATTGCGAGTTCCTTGTTTGTACTGCACAAGAATCGACCATGTTTTAGTTAACAAAAATACAGATTTCTATTACAACAATTCCATTTGTGAAGGACACAAGAAGGATATTTCATCTCTTGCATATTGTCACAACCACAAGAAACTCTCCGACATTCGAAAGATGTGTGAGGTTTGTCTTCTCTCTTTTGCAACCGAAAAGGAATCTGATTGCAATACCTACAAATCCCTCGTTGGGATATTGCACAAGGATCTTGAATGTTTTGTTGAGGATGATAATCGTCAAGTTGTGAGCTTGCCGCCTGTGGGGAAGAAAGATGATGGCCTGCCAATGGACAAAGGGTTTGGTGTTAATTATTCTTGTTGTTCGTGTTGTGGAGAGCCATTGAAAGTTAAATCTTCCAATTCAAAAGGGAAAAATGGGAGTACCTTTTCACAAGCTCCTGCTCCTTCGCCACGAGCTTCATTTACGCCCTCTTTCAGAAACGACGACAAAACTGGTTTGGAATTGCCGCACATTCGTTACACCGAACTCAAATTATTGTCAGATAGTGAATCAGAGTTTGTCGAAGACGACGAAGGTATACATGGAAGAAATCTTGATGCTCATCCATTTAAGGAGGATGCGAAGGCTGTTAAAGTGCCATTGTTACCTGAACCTGAGGACATGCATGAAAGTTCAAGGACTCCTGTTTTTGGTAAAGGGAATAAATTTTTTGGTATTCCACTAACAGATTCTGCTAATAATAGTCCCAGGTGGGCTATTAGAATCTCTAGAAAATCACCACTTGATAGAACAGAGGTTGCAGCAGAGACTTACGAAGCAGATATGATGGGGCCAGGAGACAATGATTCCATTTTGAATTGCTTGAAAAGACAAGTTCGGATAGATCGAAAATCGCTCATGGAGCTGTACATGGAACTGGATGAAGAAAGAAGCGCATCGGCTGTAGCAGCAAACAATGCAATGGCCATGATTACTCGATTACAGGCTGAAAAAGCGGCCGTTCAAATGGAAGCTTTACAGTACCAAAGAATGATGGAAGAACAGGCAGAGTATGATCAGGAAGCCTTACAAGCTACAAATGATTTGCTTGCTAAGAGAGAGGCTGAACTTGATGTTTACAGAGAAAAATATGGATATCTTGGGGAAGATGAGATATCTGATGAAGATTACCAAGAATTCAAGTCACAATCCTGTTTATCTTCGGATGAAAAATCTGAATGTAGTACGCCTTTTAGTTTTAACGGGAGAGAGAACAACAAGGAAAATTTTAACAATTTTGACGTGATGAGTGTACCGCCTGCGTTGAAGATTGGAGGGGTAAATAGCAAAGAAGAAAGTACAAACAATCAAGAGGTAGCTTTGCCATTCTCCCTAGGGAACGTTGAAGGAGAAGACCAAACCGAACCAGTGTCAAACTTTAAAGGAGAAAAAACATATCTTTTAGGCCGCTTGAAAAAGACAAAGAAGAACAACTTATCCTCAGATGGTGCAATTTCTTCTCTACATTCAAGCTCTGGCAGTGTCAATCAAATAGATGAAAATACAGGAAAGGGAAGAACTTCTGCACTGACCCGAGAGCTCTCTCATCTTAACGAGATCGTGAGAGAACTCGAAGCAGATGGCAAATTCTCTAAGCATGAAGGAAAAGTAATGTTAGCTGATATTTCACACAAATTAGGGAAAGTTCAAAATTCTCTCGACGAGAACAGCGATTCTTAA 1881 40.19 MATKRSFTSFVEQELGQFPHFVVCAVLEWVLIILLFIDGIVTFLANEFAKFFELRVPCLYCTRIDHVLVNKNTDFYYNNSICEGHKKDISSLAYCHNHKKLSDIRKMCEVCLLSFATEKESDCNTYKSLVGILHKDLECFVEDDNRQVVSLPPVGKKDDGLPMDKGFGVNYSCCSCCGEPLKVKSSNSKGKNGSTFSQAPAPSPRASFTPSFRNDDKTGLELPHIRYTELKLLSDSESEFVEDDEGIHGRNLDAHPFKEDAKAVKVPLLPEPEDMHESSRTPVFGKGNKFFGIPLTDSANNSPRWAIRISRKSPLDRTEVAAETYEADMMGPGDNDSILNCLKRQVRIDRKSLMELYMELDEERSASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMEEQAEYDQEALQATNDLLAKREAELDVYREKYGYLGEDEISDEDYQEFKSQSCLSSDEKSECSTPFSFNGRENNKENFNNFDVMSVPPALKIGGVNSKEESTNNQEVALPFSLGNVEGEDQTEPVSNFKGEKTYLLGRLKKTKKNNLSSDGAISSLHSSSGSVNQIDENTGKGRTSALTRELSHLNEIVRELEADGKFSKHEGKVMLADISHKLGKVQNSLDENSDS* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5105949 5109028 - CsaV3_1G008080.1 Csa01g00808 515305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00808 626 PANTHER MYOSIN-BINDING PROTEIN 2 3 617 IPR039306 GO:0017022
Csa01g00808 626 Coils Coil 574 594 - -
Csa01g00808 626 MobiDBLite consensus disorder prediction 185 217 - -
Csa01g00808 626 PANTHER MYOSIN-BINDING PROTEIN 6-RELATED 3 617 - -
Csa01g00808 626 MobiDBLite consensus disorder prediction 545 574 - -
Csa01g00808 626 Pfam Zein-binding 342 427 IPR007656 -
Csa01g00808 626 ProSiteProfiles GTD-binding domain profile. 337 451 IPR007656 -
Csa01g00808 626 Coils Coil 371 430 - -
Csa01g00808 626 MobiDBLite consensus disorder prediction 185 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00808 - - - csv:101220477 1210.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00808 Csa-Chr1:5105949 Csa02g00291 Csa-Chr2:2005761 3.08E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g468 Blo04g00753 . . . . Bpe13g00268 Bma06g00191 . Cmo13g00941 Cmo18g00108 . . . . . Cpe20g00213 . . . . . . . . . . . . . . . Cone2ag0876 Cone16ag0134 . . Lsi02g00337 Csa01g00808 Chy12g01308 Cme12g01733 . . Bda11g01681 . . Bpe15g00619 Bma03g00805 . Sed08g2554 . . Cma13g00915 Cma18g00138 Car13g00756 Car18g00130 Cpe09g01054 . Bhi08g01436 Tan05g2058 Cmetu12g1044 Lac10g0398 Hepe07g2265 . . Cla01g01407 Cam01g1469 Cec01g1512 Cco01g1556 Clacu01g1495 Cmu01g1389 Cre01g1306 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006343 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00808 Csa_Chr01 FPKM 1.672566 2.378166 19.406675 20.532158 13.603764 16.598263 16.970287 6.009959 4.999241 6.146264