Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00811 ATGCCCATCATGCCGATGCAGGCCCCCGGAGACGCCGTCATGGATGCTGCCGGCGTCACCAAGGAGTTCATGTTGTTTGGAGTCAGAGTTGTGGTTGACCCGATGAGGAAGAGCGTTAGTATGAACAATCTCTCTCAGTATGAACATCCTCTTGAAGCTTCTATTGATGATAATAGTAGCAACTGTAAGACTACTGTCTCTGCCGCCGACAGGAAGGAAGATTCCCCTGCCGGTTATGCTTCTGCGGATGACGCTGTTCCCAATTCCGGTGGGAATCGCGAGCGTGAACGCAAGCGAGGTGTACCGTGGACGGAGGAAGAACACAAGCTTTTCTTGCTGGGATTACAGAAAGTGGGGAAAGGAGATTGGAGAGGAATTTCGAGGAATTTTGTTAAGACTCGAACCCCAACTCAGGTTGCTAGCCACGCCCAGAAATACTTTCTACGCCGAAGCAACCTTAATCGTCGCCGCCGTAGATCCAGCCTCTTTGATATCACTACTGATACGGTAAAAGAGGCTGCTGAGGAAGAACAAATTCAAGTTCAAGATAATTCCTCCCAATTACAATCCTTGTTGCCACCCCCACCACCTGAAACTTGTAACATAAATGTATATCATCCCATGATACCAACTTTTCCTTTGTCTGTTTGCCCTGCAATTTTACCTATACCAATTCCAATGGAGACTGATGCATCACTTGAGTTTAACTTGGAAACTGATACAACATCAATTGGTGCTGAAGTTTTGCCACTCAGTGGAACCACCCTTGAGTTTAACTTGAATTCAAAATCGACATTAAACTCAGGAGCTCTTTCTCTTAACCTCGCTTTGCCTTCAGACTCAACCAATTCGTCAATGAAACACTCTGCTTTCCAAGGAATGTCAAGTATCAGCAATGGGGATAACATTATCAGTGTTGCTTAA 924 45.78 MPIMPMQAPGDAVMDAAGVTKEFMLFGVRVVVDPMRKSVSMNNLSQYEHPLEASIDDNSSNCKTTVSAADRKEDSPAGYASADDAVPNSGGNRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVKEAAEEEQIQVQDNSSQLQSLLPPPPPETCNINVYHPMIPTFPLSVCPAILPIPIPMETDASLEFNLETDTTSIGAEVLPLSGTTLEFNLNSKSTLNSGALSLNLALPSDSTNSSMKHSAFQGMSSISNGDNIISVA* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5119221 5121677 - CsaV3_1G008110.1 Csa01g00811 515308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00811 307 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Csa01g00811 307 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Csa01g00811 307 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 18 307 - -
Csa01g00811 307 MobiDBLite consensus disorder prediction 52 66 - -
Csa01g00811 307 PANTHER KIN2 18 307 - -
Csa01g00811 307 CDD SANT 102 147 IPR001005 -
Csa01g00811 307 MobiDBLite consensus disorder prediction 52 101 - -
Csa01g00811 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Csa01g00811 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Csa01g00811 307 Gene3D - 101 153 - -
Csa01g00811 307 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Csa01g00811 307 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Csa01g00811 307 SMART sant 99 149 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00811 - - - csv:101217469 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00811 Csa-Chr1:5119221 Csa03g00256 Csa-Chr3:2053692 4.93E-51 dispersed
Csa01g00191 Csa-Chr1:1252282 Csa01g00811 Csa-Chr1:5119221 1.18E-86 wgd
Csa01g00811 Csa-Chr1:5119221 Csa05g02385 Csa-Chr5:26033082 9.67E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013347 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30680 PF00249 Myb_DNA-binding 2.70E-11 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00811 Csa_Chr01 FPKM 0.84739 2.929388 7.263321 8.001299 0.0 0.0 1.157243 1.367207 1.783221 1.92045