Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00818 ATGCTTCGAAGAAAAATCAATCGAAGAGTAACCAAGACGAAGACGAATACTGTTTTTCTCCATCTTTCCCCACCATTACATAGATTCTTCCTCTCATGTCCCAACTTCATTACCCAATCTACCTCCGCCCTAGACACCGCCGCCGCCGCTACGGATATCGCCACTCTTGTCCTCGAATCCGACCCTAAAAGCTTGAGGGGATCCCTCCATGGATTACAACTTCAATTTACCCCTGAACTTGTCGACAAGGTTCTCAAGCGCCTATGGTTCCATGGACCGAAAGCGCTGCAATTTTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCTGCATCTTCCTTCGACCACGCCATCGACATTGCAGGTCGTATGCGTGACTACAAGACCGTATGGGCTCTAGTAGCTCGAATGCGAGCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATCATAGCTGAGAGGTTCGTAGCCGCTGGAAAACCTGATAGAGCGATCAAGGTTTTCTTGTCGATGCGGGAGCATGGGTGTCCTCAGGATCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTATAACAATCTGTTCAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGATGGTGTTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATACTTTTAAAAGGGTATTTTAGAGCTGGTCAGCTTAAGGAAGCTTGGGAGTTCTTTTTGCAAATGAAAGAGAGGGAAGTTGAAATTGATGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTGGGTGAAATTAAAAGGGCTCGAAAGGTTTTCAATGAAATGGTTGGTGAAGGGATTCTTCCTTCAACAGCAACTTACAATGCTATGATACAGGTTCTGTGTAAGAAAGATAGTGTGGAGAATGCAGTATTGATGTTTGAGGAGATGGTAAAGAAGGGTTATGTGCCGAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTTTCATGCAGGGAATATGGATAAGGCTATGGAGTTTATTGAGAGGATGAAAACTGATGGGTGTGAACCAAATGTTCAGACATATAACGTTGCTATTCGGTACTTTTGTGATGCTGGTGACGTTGAAAAGGGGTTGAGTATGTTTGAGAAGATGGGGCAGGGGAGCTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAGAAGTCTGAAGATTTAGTGGTTGCTGGGAAGCTGTTGCTTGAGATGGTTGATAGAGGATTCATTCCTAGGAAGTTCACTTTCAATCGAGTTCTCAACGGGCTTTTGCTGACGGGTAATCAAGCTTTTGCAAAGGAGATTTTGAGACTACAGAGCAAATGTGGCCGTCTTCCTCGCCAATTTAAGTTATGA 1509 42.74 MLRRKINRRVTKTKTNTVFLHLSPPLHRFFLSCPNFITQSTSALDTAAAATDIATLVLESDPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKCGRLPRQFKL* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5158228 5159736 + CsaV3_1G008180.1 Csa01g00818 515315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00818 502 PANTHER OS02G0679200 PROTEIN 36 502 - -
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Csa01g00818 502 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 36 502 - -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 394 418 IPR002885 -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 149 181 IPR002885 -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Csa01g00818 502 TIGRFAM PPR: pentatricopeptide repeat domain 324 356 IPR002885 -
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Csa01g00818 502 Pfam PPR repeat 218 248 IPR002885 -
Csa01g00818 502 Pfam PPR repeat 157 178 IPR002885 -
Csa01g00818 502 Pfam PPR repeat 184 202 IPR002885 -
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Csa01g00818 502 Gene3D Tetratricopeptide repeat domain 314 383 IPR011990 GO:0005515
Csa01g00818 502 Gene3D Tetratricopeptide repeat domain 207 313 IPR011990 GO:0005515
Csa01g00818 502 Gene3D Tetratricopeptide repeat domain 384 499 IPR011990 GO:0005515
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Csa01g00818 502 Pfam PPR repeat family 250 297 IPR002885 -
Csa01g00818 502 Pfam PPR repeat family 320 368 IPR002885 -
Csa01g00818 502 Pfam PPR repeat family 391 436 IPR002885 -
Csa01g00818 502 Gene3D Tetratricopeptide repeat domain 89 206 IPR011990 GO:0005515
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Csa01g00818 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Csa01g00818 502 SUPERFAMILY HCP-like 160 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00818 - - - csv:101218969 987.638
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00818 Csa01g00185 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00818 Csa-Chr1:5158228 Csa05g02033 Csa-Chr5:23670184 1.22E-18 dispersed
Csa01g03453 Csa-Chr1:31536085 Csa01g00818 Csa-Chr1:5158228 3.32E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014283 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00818 Csa_Chr01 FPKM 7.762768 7.195685 21.556608 22.227859 30.151098 30.913294 31.491562 68.651627 65.918892 69.66967