Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00820 ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCTAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAGAGCGTTGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAGGGATTGAGGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAGGATGAGGATGAAAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCGAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAGAAGTCATTGGCGCTCCTTACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGACTATACGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCTGCTTATCAGGGTTTTAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGCGATAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTATCAGTAGCTAAAGTTGGTGTCTTGGACAATAACAATGTGAAGCGGACTCACGACTGGGAAAACCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1146 42.32 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQEDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNNNVKRTHDWENLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5162868 5166891 + CsaV3_1G008200.1 Csa01g00820 515317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00820 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 373 - -
Csa01g00820 381 Gene3D - 150 237 IPR036388 -
Csa01g00820 381 Gene3D - 18 91 IPR036388 -
Csa01g00820 381 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 MobiDBLite consensus disorder prediction 131 149 - -
Csa01g00820 381 MobiDBLite consensus disorder prediction 106 153 - -
Csa01g00820 381 PANTHER TRANSCRIPTION FACTOR E2F 7 373 IPR015633 GO:0000978|GO:0006357
Csa01g00820 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
Csa01g00820 381 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00820 Csa-Chr1:5162868 Csa06g02465 Csa-Chr6:21931322 4.86E-11 dispersed
Csa01g01735 Csa-Chr1:13954890 Csa01g00820 Csa-Chr1:5162868 3.72E-18 transposed
Csa06g02714 Csa-Chr6:23777642 Csa01g00820 Csa-Chr1:5162868 9.04E-06 transposed
Csa01g00185 Csa-Chr1:1197260 Csa01g00820 Csa-Chr1:5162868 6.22E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30681 PF02319 E2F_TDP 2.30E-20 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00820 K09391 - csv:101219210 743.036