Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00820 ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCTAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAGAGCGTTGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAGGGATTGAGGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAGGATGAGGATGAAAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCGAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAGAAGTCATTGGCGCTCCTTACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGACTATACGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCTGCTTATCAGGGTTTTAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGCGATAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTATCAGTAGCTAAAGTTGGTGTCTTGGACAATAACAATGTGAAGCGGACTCACGACTGGGAAAACCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1146 42.32 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQEDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNNNVKRTHDWENLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5162868 5166891 + CsaV3_1G008200.1 Csa01g00820 515317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00820 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 373 - -
Csa01g00820 381 Gene3D - 150 237 IPR036388 -
Csa01g00820 381 Gene3D - 18 91 IPR036388 -
Csa01g00820 381 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 MobiDBLite consensus disorder prediction 131 149 - -
Csa01g00820 381 MobiDBLite consensus disorder prediction 106 153 - -
Csa01g00820 381 PANTHER TRANSCRIPTION FACTOR E2F 7 373 IPR015633 GO:0000978|GO:0006357
Csa01g00820 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Csa01g00820 381 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
Csa01g00820 381 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00820 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 743.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00820 Csa-Chr1:5162868 Csa06g02465 Csa-Chr6:21931322 4.86E-11 dispersed
Csa01g01735 Csa-Chr1:13954890 Csa01g00820 Csa-Chr1:5162868 3.72E-18 transposed
Csa06g02714 Csa-Chr6:23777642 Csa01g00820 Csa-Chr1:5162868 9.04E-06 transposed
Csa01g00185 Csa-Chr1:1197260 Csa01g00820 Csa-Chr1:5162868 6.22E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa04g00929 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-60 230.3
Csa06g02465 . 20 434 E2F-DP Transcription Factor Family AT5G22220 58.3 4.0e-114 408.7
Csa06g02465 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 2.7e-121 432.6
Csa06g02714 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.1 4.0e-117 418.7
Csa02g02126 . 150 404 E2F-DP Transcription Factor Family AT1G47870 54.3 5.2e-67 251.9
Csa01g00820 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 8.4e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30681 PF02319 E2F_TDP 2.30E-20 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00820 Csa_Chr01 FPKM 4.484018 3.992027 6.488661 7.267703 3.553158 3.663979 3.314907 7.977216 9.575188 13.399063