Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00820 | ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCTAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAGAGCGTTGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAGGGATTGAGGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGAGGATGAGGATGAAAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCGAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAGAAGTCATTGGCGCTCCTTACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGACTATACGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCTGCTTATCAGGGTTTTAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGCGATAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTATCAGTAGCTAAAGTTGGTGTCTTGGACAATAACAATGTGAAGCGGACTCACGACTGGGAAAACCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA | 1146 | 42.32 | MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQEDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNNNVKRTHDWENLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS* | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5162868 | 5166891 | + | CsaV3_1G008200.1 | Csa01g00820 | 515317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00820 | 381 | PANTHER | E2F TRANSCRIPTION FACTOR-LIKE E2FF | 7 | 373 | - | - | |
Csa01g00820 | 381 | Gene3D | - | 150 | 237 | IPR036388 | - | |
Csa01g00820 | 381 | Gene3D | - | 18 | 91 | IPR036388 | - | |
Csa01g00820 | 381 | SMART | E2F_TDP_2 | 23 | 88 | IPR003316 | GO:0005667|GO:0006355 | |
Csa01g00820 | 381 | SMART | E2F_TDP_2 | 155 | 235 | IPR003316 | GO:0005667|GO:0006355 | |
Csa01g00820 | 381 | MobiDBLite | consensus disorder prediction | 131 | 149 | - | - | |
Csa01g00820 | 381 | MobiDBLite | consensus disorder prediction | 106 | 153 | - | - | |
Csa01g00820 | 381 | PANTHER | TRANSCRIPTION FACTOR E2F | 7 | 373 | IPR015633 | GO:0000978|GO:0006357 | |
Csa01g00820 | 381 | Pfam | E2F/DP family winged-helix DNA-binding domain | 24 | 88 | IPR003316 | GO:0005667|GO:0006355 | |
Csa01g00820 | 381 | Pfam | E2F/DP family winged-helix DNA-binding domain | 157 | 235 | IPR003316 | GO:0005667|GO:0006355 | |
Csa01g00820 | 381 | SUPERFAMILY | Winged helix DNA-binding domain | 157 | 236 | IPR036390 | - | |
Csa01g00820 | 381 | SUPERFAMILY | Winged helix DNA-binding domain | 22 | 86 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00820 | Csa-Chr1:5162868 | Csa06g02465 | Csa-Chr6:21931322 | 4.86E-11 | dispersed | |
Csa01g01735 | Csa-Chr1:13954890 | Csa01g00820 | Csa-Chr1:5162868 | 3.72E-18 | transposed | |
Csa06g02714 | Csa-Chr6:23777642 | Csa01g00820 | Csa-Chr1:5162868 | 9.04E-06 | transposed | |
Csa01g00185 | Csa-Chr1:1197260 | Csa01g00820 | Csa-Chr1:5162868 | 6.22E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30681 | PF02319 | E2F_TDP | 2.30E-20 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00820 | K09391 | - | csv:101219210 | 743.036 |