Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00824 ATGGTCGGCCATGGCAACCACAGGTTGAAACTCTCCATCTTCCACCACCGATCTTCCTCCGATCCCAAACCTCAACGCCCAAAAGACTGTCCCCAAGAATACCTTTGCCCAATTTCCAAGTCTTTAATGGCCGACCCAGTTGTCGTCTCCTCCGGTCAAACCTTCGAGCGTCTCTCTGTTGAAGTTTGTCAAGACTTGGGGTTTTCCCCCAGGCTTGAAGAAGATGACTCAAGGTCCGATTTCTCCTCTGTTATAACCAACAGGAACATAAGATCTACCATTCTCAAATGGTGCGATAACAACGGAATCGAACATCCCCAACCACCGTCTTACACTTCCATTGAACTCGTTGTTCGTCAATTAATGCAGAAGGAGGAGCAGGAGAATCGATTCGAGGTTTCTGATAGCGCGTTGATTAGGGGCGTCGCTGATAAACCGACGGGAGTTGCGGTTCATGCTACCACCGAAGTTGGGTTGCGACTGAACCGATTTCAACTCAACTCGCCGGAGCAGACTGAGGAGGTCATACGGGAGAGTACTCTCTTGCCTTTCAAAACACAACCATCTAGTTATGCTACCAATTCTCCTTCCTCTTCACATGGAGGCATCGATAGAGATTCCAATCACAGAGGATATTCTGATTCGTATGCCCCAAATTTAGAGGAAGAATCTCGACTCATTTTGAAATTCAGAAGCAACGACGAATTCGAGCAACGAGAAGGAGTGATTTCCCTACGAAAATTAACGAAATCAAACGAATCGATTAGGGCTTCTTTGTGTACAAAAGAATTCCTCGCCGCCTTACTTCCTCTGATTTTATCCCGATCTACAAATGTCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAAGCGAACAAATTGAAGATCGTACGCGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCGGAAACACCGAATCTCAAGAACACGCTGCCGGCGCTTTGTTCAGTTTATCATTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGTTGATGAACACGCTCCGATCCGACAGTGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTATCATTTGACTCTAAACCCCAGCAACCGAGTCAAACTGGTGAAACTCGGTGCCGTTCCAATTCTGCTATCGTTGACGAGAATCGAAGGGTGTACGAGCCGAATAGTACTGATTCTATGTAACATTGCGGTGTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGAGTTGTTTGGTGGGGTTATTGAAGGAGAAGGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAGAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAAAGAGGAAGCGAGCGGGCGAGGGAGAAGGCTAAGAGGATCTTGCAGATGATGAGAACCGGTGGGAGCGGCTCGGTCGAGATTGAAGGTGTCGTCCAACATGGTCTTGATATGGGTGGAGTCAGCTGGACCGGTCGGGTTGGTACCGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1623 48.92 MVGHGNHRLKLSIFHHRSSSDPKPQRPKDCPQEYLCPISKSLMADPVVVSSGQTFERLSVEVCQDLGFSPRLEEDDSRSDFSSVITNRNIRSTILKWCDNNGIEHPQPPSYTSIELVVRQLMQKEEQENRFEVSDSALIRGVADKPTGVAVHATTEVGLRLNRFQLNSPEQTEEVIRESTLLPFKTQPSSYATNSPSSSHGGIDRDSNHRGYSDSYAPNLEEESRLILKFRSNDEFEQREGVISLRKLTKSNESIRASLCTKEFLAALLPLILSRSTNVQINAVASVVNLSLEKANKLKIVRAGFVPPLIDVLDGGNTESQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRSDSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCTSRIVLILCNIAVSVDGRSAMLDANAVSCLVGLLKEKEMDSESTRENCVVALYALSQGGFRFRGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEIEGVVQHGLDMGGVSWTGRVGTGLNRYSTNTTKF* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5199945 5202460 + CsaV3_1G008240.1 Csa01g00824 515321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00824 540 Gene3D - 401 501 IPR011989 -
Csa01g00824 540 SUPERFAMILY RING/U-box 16 108 - -
Csa01g00824 540 MobiDBLite consensus disorder prediction 186 202 - -
Csa01g00824 540 SMART arm_5 334 374 IPR000225 GO:0005515
Csa01g00824 540 SMART arm_5 414 457 IPR000225 GO:0005515
Csa01g00824 540 SMART arm_5 293 333 IPR000225 GO:0005515
Csa01g00824 540 SMART arm_5 375 413 IPR000225 GO:0005515
Csa01g00824 540 SMART arm_5 251 292 IPR000225 GO:0005515
Csa01g00824 540 Gene3D - 226 400 IPR011989 -
Csa01g00824 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 103 IPR013083 -
Csa01g00824 540 PANTHER U BOX DOMAIN-CONTAINING 1 514 - -
Csa01g00824 540 SUPERFAMILY ARM repeat 229 497 IPR016024 -
Csa01g00824 540 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842|GO:0016567
Csa01g00824 540 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 514 - -
Csa01g00824 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515
Csa01g00824 540 SMART Ubox_2 33 97 IPR003613 GO:0004842|GO:0016567
Csa01g00824 540 MobiDBLite consensus disorder prediction 186 216 - -
Csa01g00824 540 Pfam U-box domain 31 101 IPR003613 GO:0004842|GO:0016567
Csa01g00824 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Csa01g00824 540 CDD RING-Ubox 35 71 - -
Csa01g00824 540 Pfam Armadillo/beta-catenin-like repeat 334 373 IPR000225 GO:0005515
Csa01g00824 540 Pfam Armadillo/beta-catenin-like repeat 296 332 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00824 Csa-Chr1:5199945 Csa02g01443 Csa-Chr2:13832014 3.04E-10 dispersed
Csa01g00180 Csa-Chr1:1168281 Csa01g00824 Csa-Chr1:5199945 0 wgd
Csa01g00824 Csa-Chr1:5199945 Csa05g02927 Csa-Chr5:29699696 6.04E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00824 - - csv:101221183 1042.72