Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00826 | ATGGCTTTCCCTTTCCCTTTCCCTTTACTTTTCCTCGTTACCATCATCCTCCCTTTCCCATCTCTTGTTCATTCCAAACTCTCCCTCGGTTATTACCAAAAAACATGTCCCGACTTTGAGAAGATTATTCGTGAAACTGTCACCAATAAACAAATAACCAGTCCTGTTACCGCTGCAGGAACCCTTCGCCTCTTCTTCCATGACTGTATGGTTGATGGTTGTGATGCCTCCGTTCTCATTTCCTCCAACTCCTTCAACCAAGCTGAGCGTGAGGCTGAAATCAACCACTCCCTTTCTGGTGACGCCTTCGATGTCGTCGTCCATGCTAAGACCAACCTCGAACTCGCATGCCCTGGCATTGTGTCTTGTTCTGACATCTTGGCACAGGCGACTCGAGATCTAGTAGTGATGGTGGGAGGACCATTCTACAACGTTCGATTGGGGAGAAAAGACGGAATGATATCAAAAGCAGGCAATGTGGAAGGGAACCTCCCAACAGTGAACTTCACAATGGACAAACTCATCGATTACTTCGTTGAAAGAGGCTTCACCGTCCAAGAACTGGTCGCCCTCTCCGGCGGTCACACCATCGGTTTCTCCCACTGCAAGGAATTCACCGACCGACTCTTCCACCATAGTCCCACGTCACCCACCGACCCAGACATATACCCAAAATTCGCCGAAAAGCTAAAGACCATGTGTGCCAATTACGAAAAAGACACCGCCATGTCAGCTTTCAACGACGTCATAACACCTGGCAAATTCGACAATATGTTCTACCAGAATCTTCCACGTGGCCTAGGCCTACTGGCCACTGACAACGCCCTCGATAAGGATCCAAGGACGAAGCCCTTTGTGGATCTTTACGCTGTTAACCAAACGGCGTTTTTTCACGACTTTGGTCGCGCTATGGAGAAGCTCAGTGTTCACGGCGTTAAAACGGGAAGAAAGGGGGAGGTTCGACGAAGGTGTGACCTTTTTAATTCTATTAATACATGA | 999 | 48.45 | MAFPFPFPLLFLVTIILPFPSLVHSKLSLGYYQKTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASVLISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMISKAGNVEGNLPTVNFTMDKLIDYFVERGFTVQELVALSGGHTIGFSHCKEFTDRLFHHSPTSPTDPDIYPKFAEKLKTMCANYEKDTAMSAFNDVITPGKFDNMFYQNLPRGLGLLATDNALDKDPRTKPFVDLYAVNQTAFFHDFGRAMEKLSVHGVKTGRKGEVRRRCDLFNSINT* | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5207608 | 5209653 | - | CsaV3_1G008260.1 | Csa01g00826 | 515323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00826 | 332 | Pfam | Peroxidase | 45 | 291 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PANTHER | - | 9 | 332 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | SUPERFAMILY | Heme-dependent peroxidases | 27 | 328 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | Gene3D | - | 30 | 328 | - | - | |
Csa01g00826 | 332 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 187 | 197 | IPR019793 | - | |
Csa01g00826 | 332 | PRINTS | Haem peroxidase superfamily signature | 58 | 72 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Haem peroxidase superfamily signature | 121 | 138 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Haem peroxidase superfamily signature | 139 | 151 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Haem peroxidase superfamily signature | 187 | 202 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Haem peroxidase superfamily signature | 248 | 263 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | ProSiteProfiles | Plant heme peroxidase family profile. | 26 | 328 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | CDD | secretory_peroxidase | 26 | 327 | IPR033905 | GO:0004601|GO:0042744 | |
Csa01g00826 | 332 | ProSitePatterns | Peroxidases active site signature. | 58 | 69 | IPR019794 | GO:0004601 | |
Csa01g00826 | 332 | Gene3D | Peroxidase, domain 2 | 165 | 307 | - | - | |
Csa01g00826 | 332 | PANTHER | PEROXIDASE 41 | 9 | 332 | - | - | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 36 | 55 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 60 | 80 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 101 | 114 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 120 | 130 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 139 | 154 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 186 | 198 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 246 | 261 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 262 | 279 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g00826 | 332 | PRINTS | Plant peroxidase signature | 302 | 315 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00826 | Csa-Chr1:5207608 | Csa02g02592 | Csa-Chr2:22580320 | 2.98E-96 | dispersed | |
Csa01g01265 | Csa-Chr1:7902328 | Csa01g00826 | Csa-Chr1:5207608 | 1.65E-88 | transposed | |
Csa01g02343 | Csa-Chr1:20616604 | Csa01g00826 | Csa-Chr1:5207608 | 2.56E-17 | transposed | |
Csa01g00179 | Csa-Chr1:1163120 | Csa01g00826 | Csa-Chr1:5207608 | 1.72E-151 | wgd | |
Csa01g00826 | Csa-Chr1:5207608 | Csa03g03898 | Csa-Chr3:34204986 | 5.91E-139 | wgd | |
Csa01g00826 | Csa-Chr1:5207608 | Csa05g02926 | Csa-Chr5:29698277 | 6.93E-133 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00826 | K00430 | - | csv:101220163 | 660.218 |