Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00826 ATGGCTTTCCCTTTCCCTTTCCCTTTACTTTTCCTCGTTACCATCATCCTCCCTTTCCCATCTCTTGTTCATTCCAAACTCTCCCTCGGTTATTACCAAAAAACATGTCCCGACTTTGAGAAGATTATTCGTGAAACTGTCACCAATAAACAAATAACCAGTCCTGTTACCGCTGCAGGAACCCTTCGCCTCTTCTTCCATGACTGTATGGTTGATGGTTGTGATGCCTCCGTTCTCATTTCCTCCAACTCCTTCAACCAAGCTGAGCGTGAGGCTGAAATCAACCACTCCCTTTCTGGTGACGCCTTCGATGTCGTCGTCCATGCTAAGACCAACCTCGAACTCGCATGCCCTGGCATTGTGTCTTGTTCTGACATCTTGGCACAGGCGACTCGAGATCTAGTAGTGATGGTGGGAGGACCATTCTACAACGTTCGATTGGGGAGAAAAGACGGAATGATATCAAAAGCAGGCAATGTGGAAGGGAACCTCCCAACAGTGAACTTCACAATGGACAAACTCATCGATTACTTCGTTGAAAGAGGCTTCACCGTCCAAGAACTGGTCGCCCTCTCCGGCGGTCACACCATCGGTTTCTCCCACTGCAAGGAATTCACCGACCGACTCTTCCACCATAGTCCCACGTCACCCACCGACCCAGACATATACCCAAAATTCGCCGAAAAGCTAAAGACCATGTGTGCCAATTACGAAAAAGACACCGCCATGTCAGCTTTCAACGACGTCATAACACCTGGCAAATTCGACAATATGTTCTACCAGAATCTTCCACGTGGCCTAGGCCTACTGGCCACTGACAACGCCCTCGATAAGGATCCAAGGACGAAGCCCTTTGTGGATCTTTACGCTGTTAACCAAACGGCGTTTTTTCACGACTTTGGTCGCGCTATGGAGAAGCTCAGTGTTCACGGCGTTAAAACGGGAAGAAAGGGGGAGGTTCGACGAAGGTGTGACCTTTTTAATTCTATTAATACATGA 999 48.45 MAFPFPFPLLFLVTIILPFPSLVHSKLSLGYYQKTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASVLISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMISKAGNVEGNLPTVNFTMDKLIDYFVERGFTVQELVALSGGHTIGFSHCKEFTDRLFHHSPTSPTDPDIYPKFAEKLKTMCANYEKDTAMSAFNDVITPGKFDNMFYQNLPRGLGLLATDNALDKDPRTKPFVDLYAVNQTAFFHDFGRAMEKLSVHGVKTGRKGEVRRRCDLFNSINT* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5207608 5209653 - CsaV3_1G008260.1 Csa01g00826 515323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00826 332 Pfam Peroxidase 45 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PANTHER - 9 332 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 SUPERFAMILY Heme-dependent peroxidases 27 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 Gene3D - 30 328 - -
Csa01g00826 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Csa01g00826 332 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 ProSiteProfiles Plant heme peroxidase family profile. 26 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 CDD secretory_peroxidase 26 327 IPR033905 GO:0004601|GO:0042744
Csa01g00826 332 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Csa01g00826 332 Gene3D Peroxidase, domain 2 165 307 - -
Csa01g00826 332 PANTHER PEROXIDASE 41 9 332 - -
Csa01g00826 332 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00826 332 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00826 Csa-Chr1:5207608 Csa02g02592 Csa-Chr2:22580320 2.98E-96 dispersed
Csa01g01265 Csa-Chr1:7902328 Csa01g00826 Csa-Chr1:5207608 1.65E-88 transposed
Csa01g02343 Csa-Chr1:20616604 Csa01g00826 Csa-Chr1:5207608 2.56E-17 transposed
Csa01g00179 Csa-Chr1:1163120 Csa01g00826 Csa-Chr1:5207608 1.72E-151 wgd
Csa01g00826 Csa-Chr1:5207608 Csa03g03898 Csa-Chr3:34204986 5.91E-139 wgd
Csa01g00826 Csa-Chr1:5207608 Csa05g02926 Csa-Chr5:29698277 6.93E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00826 K00430 - csv:101220163 660.218