Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00827 ATGGCAGTCCGTAAGTTCCTCCTCCTCCTCCTTCTTGGGGTCTTCGTTTTCCTCTGCCTTTCACAGGTATCTTCCAATGGCTACGAAGAAGAAGGGATGAAGGAGATGGAATATGATGAAAAAATGATGAGAGGGGCAAACAGAAGGCTAATGCAATACATAGATTGTGGAGGGCAATGCAGGCGTCGTTGCGGGGCGCACTCGAGGCCAAACCGATGCATAAGAGCGTGCGGGACATGCTGCCGGCGCTGCAGATGTGTGCCGCCGGGTACGTCAGGTAATCGCGAGATGTGTGGCACTTGCTACACGAGCATGACCACTCATGGGAACAGAACCAAGTGCCCTTAA 348 52.87 MAVRKFLLLLLLGVFVFLCLSQVSSNGYEEEGMKEMEYDEKMMRGANRRLMQYIDCGGQCRRRCGAHSRPNRCIRACGTCCRRCRCVPPGTSGNREMCGTCYTSMTTHGNRTKCP* 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5210806 5212803 + CsaV3_1G008270.1 Csa01g00827 515324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00827 115 Pfam Gibberellin regulated protein 55 115 IPR003854 -
Csa01g00827 115 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 14 115 - -
Csa01g00827 115 PANTHER GIBBERELLIN-REGULATED PROTEIN 2-RELATED 14 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00827 - - - cmo:103483303 189.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00827 Csa-Chr1:5210806 Csa03g04280 Csa-Chr3:37493613 3.47E-28 dispersed
Csa01g00827 Csa-Chr1:5210806 Csa03g03900 Csa-Chr3:34217470 1.02E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g693 . . . . . . . . . Cmo18g00117 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00827 Chy12g01290 Cme12g01716 . . . . . . . . Sed01g1682 . . . Cma18g00149 . Car18g00143 . . Bhi08g01458 Tan05g2037 Cmetu12g1942 . Hepe07g2247 . . Cla01g01393 Cam01g1454 Cec01g1490 . Clacu01g1478 Cmu01g1373 Cre01g1289 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000331 5 7 1 4 7 5 5 5 5 2 4 5 4 4 5 4 5 4 4 5 4 5 5 3 4 3 5 6 8 4 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00827 Csa_Chr01 FPKM 14.685823 12.268615 22.907602 23.510477 8.404475 3.674129 7.479462 25.714722 27.303318 37.759415