Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00833 ATGCCAAGATTTTTAAATGAAATGAAGCAAAAGGATGGTTATCTGATATACCCATCTCCCCTTTCACCTTTTGATGGTGGCACTGATCCAAAATCAAATGATTCTACACCATCGCCATCATCATCTTCTTCTTTCAGCAGTATCAGCCCAATCCTTCTTCTAGTTATAGTGATTCTAGCAGTCATCTTTTTCATCTCTGGTTTACTCCATTTGCTCGTTCGATTTCTACTAAAAAGATCTTCCCCATCAATCTACCAATCCAATCGATACGCAGAACGGCCTGGATCTCACACACTCCAAAGACAGCTCCAGCAGCTCTTTCGCCTTCACGATTCAGGCCTCGACCAAACCTTCATCGACGCTTTGCCAGTGTTCTTGTACAAAGATATCATGGGTTTAAAAGAGCCATTCGATTGCGCCGTTTGTCTCTACGAATTTTCCGATCAGGACAGGCTGAGATTACTCCCCATCTGTAGCCATGCTTTTCACATCAGTTGCATAGACACATGGCTACTCTCAAACTCCACATGTCCACTCTGCAGGGCCACCCTTTTGGGCTCCAGTTTCCCTTCCGAAAACCCTAATCTCAACGAGATTTTTGGGCAAGAACACAATTATCACAGACAACCAGAAAACACGGTTTCTGGAAATCATCAGAAACGAGTAACAACAACAATGGAGGAATCTGCAGGGGAAATGAGAGTATTGTCTGTGAGACTCGGGAAGTTCAAGAAACTAAACAACGAAGAAGAAGAAGAAGAAGATGATGATGATGATGAAATAGAAGAGAAAGGAGAAAGCAGTAGTCAAAATAACCTTAACGCGAGAAGATGCTACTCAATGGGGACTTACCAATACGTTGTTGGAGAATCAGATTTACAGGTGATGAAGGAGAAGTTAAACATAGAGAATGTAAGAGGAAATGGGGAAATGGACGGGAAGAAAATCAGTGGGAGAAGTAAAGGGGAAAGTTTCTCGGTGTCGAAGATTTGGCAATGGTCGAAGAAGAGTGAGTTGCCAATTACGAGCAGCTCCAACAGTGAATGGAAGACGGCAGTTGTGTGA 1065 43.0 MPRFLNEMKQKDGYLIYPSPLSPFDGGTDPKSNDSTPSPSSSSSFSSISPILLLVIVILAVIFFISGLLHLLVRFLLKRSSPSIYQSNRYAERPGSHTLQRQLQQLFRLHDSGLDQTFIDALPVFLYKDIMGLKEPFDCAVCLYEFSDQDRLRLLPICSHAFHISCIDTWLLSNSTCPLCRATLLGSSFPSENPNLNEIFGQEHNYHRQPENTVSGNHQKRVTTTMEESAGEMRVLSVRLGKFKKLNNEEEEEEDDDDDEIEEKGESSSQNNLNARRCYSMGTYQYVVGESDLQVMKEKLNIENVRGNGEMDGKKISGRSKGESFSVSKIWQWSKKSELPITSSSNSEWKTAVV* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5242398 5244998 + CsaV3_1G008330.1 Csa01g00833 515330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00833 354 MobiDBLite consensus disorder prediction 208 226 - -
Csa01g00833 354 MobiDBLite consensus disorder prediction 250 264 - -
Csa01g00833 354 MobiDBLite consensus disorder prediction 208 228 - -
Csa01g00833 354 SUPERFAMILY RING/U-box 118 185 - -
Csa01g00833 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 186 IPR013083 -
Csa01g00833 354 MobiDBLite consensus disorder prediction 246 274 - -
Csa01g00833 354 MobiDBLite consensus disorder prediction 26 46 - -
Csa01g00833 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 348 - -
Csa01g00833 354 CDD RING-H2_PA-TM-RING 138 181 - -
Csa01g00833 354 SMART ring_2 139 180 IPR001841 -
Csa01g00833 354 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Csa01g00833 354 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 1 348 - -
Csa01g00833 354 Pfam Ring finger domain 138 181 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00833 - - - csv:101221418 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00833 Csa-Chr1:5242398 Csa01g01941 Csa-Chr1:16299480 2.33E-56 dispersed
Csa01g00833 Csa-Chr1:5242398 Csa05g02353 Csa-Chr5:25857248 2.12E-81 wgd
Csa01g00833 Csa-Chr1:5242398 Csa05g02913 Csa-Chr5:29612318 1.17E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013813 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00833 Csa_Chr01 FPKM 7.408679 8.887733 12.741434 11.132585 11.140177 11.975001 12.441351 15.803256 14.671735 15.237913