Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00843 ATGGCTATTCGAGGTGTCGATTTCAAATGGTACGATGGCTTCTTCTTGTCTATGCTTGCAACTAGTATAATCATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACATATCCTTTGCACATATGGATTGTGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTTTGTTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGGTATGCTCGGTTTTGTGGAAGAGTCGTGGTTCTTTCTATCTTGTCTCTATTGCTCTACCCGTTTCTATGTGCGTGGACTGTGATTGGTACCCTGTGGTTTAGAGATGCTAAAGACTGTTTACCTGAAGAGGGACAGAAATGGGGTTTCCTTATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGTTAGTGCGTAGACAAGCACACTTGTTCCGTGCCCAACAAGGCATACCGGTATCAGAATATGGAGTTCTAGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGCCATTGGCCAAGATGCTACTGGGTATCATCCCGGACTGTTCTTAACCTCAGCTCAGCGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTTAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTTGAATGTATTGACGAATGGCTTCGTCTGAATGTCAAATGTCCTCGATGCCGCTCCTCCGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTCACAATGCTTTTGTAACAACCCAACCTTCAAGTCTATCGAGATCAACTCCAACTCACGCAGCTCATACCGAAAACAGTCTCCAAACTGATACTGCCTTAGATGCTTTGGAAAATGGAAACTCACCCATGCCATCTGCTTCTCCTCATTGA 1047 44.99 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLVRRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRAIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSHNAFVTTQPSSLSRSTPTHAAHTENSLQTDTALDALENGNSPMPSASPH* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5282234 5286307 + CsaV3_1G008430.1 Csa01g00843 515340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00843 348 MobiDBLite consensus disorder prediction 297 324 - -
Csa01g00843 348 SUPERFAMILY RING/U-box 216 284 - -
Csa01g00843 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 330 - -
Csa01g00843 348 SMART ring_2 235 275 IPR001841 -
Csa01g00843 348 Pfam Ring finger domain 234 276 IPR001841 -
Csa01g00843 348 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Csa01g00843 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 330 IPR044793 GO:0004842|GO:0010182
Csa01g00843 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00843 Csa01g00157 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00843 Csa-Chr1:5282234 Csa04g01247 Csa-Chr4:11006948 2.66E-13 dispersed
Csa01g00157 Csa-Chr1:1012940 Csa01g00843 Csa-Chr1:5282234 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00843 K16284 - csv:101222360 719.153