Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00844 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTTGGAGAGTACCAACGGGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCTGAGATAAAGGGAGAAGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCATAGTAGGATTTACAGAGGTGTCTATAAGCAAAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAACTTGGCTAATTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGTGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTTTGAAACTAGCTCTCGACATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTTCACAGAGATCTTAAATCAGAAAATCTCTTACTTGGTGAAGATATGTGTGTTAAGGTAGCAGATTTTGGTATCTCGTGCTTAGAATCTCAATGCGGAAGTGCAAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTCTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGATAACTTGACTCCCGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCTCTGCCTTCTGCGTGCCCGCAGGCATTTCGTCATCTGATTAAGAGATGCTGGTCGAAAAAACCCGACAAGCGACCGCATTTTGACGAGATCGTTTCAATTTTGGAAACTTATGTGGAGTCTTACAATGAAGATCCAGAATTTTTTTGTCATTATGTCCCCTCATCTAGCAGATACATTGCTTGGAAATGCTTACCAAAATGTATTACCAAACAATCATCTGCTTCCTTGAAGCCTAGGAATTCTTCATCCTCTTGA 1086 42.63 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNLTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSKKPDKRPHFDEIVSILETYVESYNEDPEFFCHYVPSSSRYIAWKCLPKCITKQSSASLKPRNSSSS* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5290383 5293511 + CsaV3_1G008440.1 Csa01g00844 515341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00844 361 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Csa01g00844 361 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Csa01g00844 361 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00844 361 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Csa01g00844 361 CDD STKc_MAP3K-like 66 311 - -
Csa01g00844 361 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Csa01g00844 361 Gene3D Transferase(Phosphotransferase) domain 1 140 327 - -
Csa01g00844 361 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00844 361 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Csa01g00844 361 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Csa01g00844 361 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Csa01g00844 361 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Csa01g00844 361 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Csa01g00844 361 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Csa01g00844 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00844 Csa-Chr1:5290383 Csa06g03630 Csa-Chr6:29264801 8.00E-116 dispersed
Csa01g01755 Csa-Chr1:14252619 Csa01g00844 Csa-Chr1:5290383 3.22E-20 transposed
Csa02g00709 Csa-Chr2:5741381 Csa01g00844 Csa-Chr1:5290383 5.15E-100 transposed
Csa03g00046 Csa-Chr3:453919 Csa01g00844 Csa-Chr1:5290383 1.04E-79 transposed
Csa03g04310 Csa-Chr3:37721055 Csa01g00844 Csa-Chr1:5290383 4.33E-80 transposed
Csa05g00935 Csa-Chr5:7524197 Csa01g00844 Csa-Chr1:5290383 3.18E-24 transposed
Csa06g01398 Csa-Chr6:11945369 Csa01g00844 Csa-Chr1:5290383 3.05E-36 transposed
Csa06g03473 Csa-Chr6:28479047 Csa01g00844 Csa-Chr1:5290383 2.40E-134 transposed
Csa07g00131 Csa-Chr7:1153965 Csa01g00844 Csa-Chr1:5290383 1.13E-79 transposed
Csa03g03695 Csa-Chr3:32869564 Csa01g00844 Csa-Chr1:5290383 5.64E-41 transposed
Csa01g00844 Csa-Chr1:5290383 Csa03g03932 Csa-Chr3:34431060 1.85E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77766 PF07714 PK_Tyr_Ser-Thr 1.70E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00844 - - csv:101222762 745.347