Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00847 ATGGAGAACAATCAGGATCAATGTCAGTTACAGTTTCAGCCATTTGGAAACGGGCACCGTTTTGAGAATGGAGTTGAGGTTTTTGTGGGTTCTTCCAAGAATACAGGAAACGATGACTTCTCCGATCGATTTTCCGACGCCGGAGATTCTTCAACTGGTCATGATCATGACTCGGTGGTTTCGGATTCTGAAAGTGGAATTTCAGGGCCGAGTATGGAGCAATTGGAATGGCGGAATGAGGGATTGGTAAAACTTGTAGAAGAAGACAAAATTTACGACCTAATCAAGAGAAGATTCGTATCTGGTTTGGGATTACTTGGTCCGCAAACTACGGTCTCGGCCGTTTACAAGAATAGTCATTCGACTCATATTGGGCAAGCCCGTTTACACACGTTTCAGATTTACTCCAAAGCAGTTGAGAAGAAAAATGGCGGTAATGCCAATGTCAAGTACGCTTGGTTGGGGGCTTCTAAAGATCAAATCAATAGCATTCTCGGCTATGGTTTTTCCCATTGCAACAAACCTGAGAGTTCGCAGTGTCTTGGCTCTGGCATTTATCTTTCCCCTGATAATCATCCTCTTGAAAGCCTGGAAGATGCTGTTGTAGATGCAGATGGTTTAAGGCACCTATTGCTCTGCCGTGTTGTATTGGGTAAATCGGAGCTTATTCATCCTGGTTCTAGACAGAATCATCCAAGTTGTGAAGCTTTTGATTCGGGTGCTGACAATCTCTTTGCACCAAAGAAATACATAGTTTGGAGTACACACATGAACACCCACATCTTGCCTGAGTATCTTATCAGTTTTAGAACTCCCCCTCGCTTGAAAGGAACTTTGAAGGCTAGACAGCCTTTCAGAATGCCAACCTCCCCTTGGATGCCATTTCCATCTCTGATTTCTGTTCTCTCTAAGTATCTACCTGCTCCTGAAATTGCTATGATCACCAAGTATCACAAAGACCACAGGCTTTTGAATTCTAGGATCATAAGATTTCAAGGCATGAGTTGA 1008 43.35 MENNQDQCQLQFQPFGNGHRFENGVEVFVGSSKNTGNDDFSDRFSDAGDSSTGHDHDSVVSDSESGISGPSMEQLEWRNEGLVKLVEEDKIYDLIKRRFVSGLGLLGPQTTVSAVYKNSHSTHIGQARLHTFQIYSKAVEKKNGGNANVKYAWLGASKDQINSILGYGFSHCNKPESSQCLGSGIYLSPDNHPLESLEDAVVDADGLRHLLLCRVVLGKSELIHPGSRQNHPSCEAFDSGADNLFAPKKYIVWSTHMNTHILPEYLISFRTPPRLKGTLKARQPFRMPTSPWMPFPSLISVLSKYLPAPEIAMITKYHKDHRLLNSRIIRFQGMS* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5306606 5309761 - CsaV3_1G008470.1 Csa01g00847 515344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00847 335 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 37 326 IPR044964 -
Csa01g00847 335 ProSiteProfiles RST domain profile. 286 335 IPR022003 -
Csa01g00847 335 Pfam RCD1-SRO-TAF4 (RST) plant domain 288 322 IPR022003 -
Csa01g00847 335 MobiDBLite consensus disorder prediction 39 71 - -
Csa01g00847 335 MobiDBLite consensus disorder prediction 39 61 - -
Csa01g00847 335 Pfam Poly(ADP-ribose) polymerase catalytic domain 140 225 IPR012317 GO:0003950
Csa01g00847 335 Gene3D - 80 271 - -
Csa01g00847 335 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 37 326 - -
Csa01g00847 335 ProSiteProfiles PARP catalytic domain profile. 69 290 IPR012317 GO:0003950
Csa01g00847 335 SUPERFAMILY ADP-ribosylation 82 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00847 - - - csv:101222840 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00847 Csa-Chr1:5306606 Csa02g02238 Csa-Chr2:20118557 1.15E-39 dispersed
Csa01g00847 Csa-Chr1:5306606 Csa03g00137 Csa-Chr3:1051439 1.11E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g744 Blo04g00736 . . . . . . . Cmo13g00919 Cmo18g00126 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00369 Csa01g00847 Chy12g01269 Cme12g01697 . . . Bda14g00813 . Bpe15g00636 Bma03g00783 . . . . Cma13g00890 . Car13g00730 Car18g00158 Cpe09g01028 . . . . . . . . Cla01g01297 Cam01g1433 Cec01g1467 Cco01g1458 Clacu01g1363 Cmu01g1268 Cre01g1268 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004588 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00847 Csa_Chr01 FPKM 0.0 0.764711 0.066772 0.239944 0.0 0.0 0.0 0.307007 0.378449 0.0