Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00849 ATGGGTCTTACTTCTCTTCAAGTTTGCATGGACTCTTCTGATTGGCTTCAGGGTACAATGAACGAGGAGTCGGGGATGGATTCTTCGTCGTTATCGGGAGATATGCTATCGTGTTCAAGGCCATTAACAGAGAGGAGATTAAGGCCACAGCATGATCAAGCTTTGAAATGCCCAAGATGTGATTCAACTCATACCAAATTTTGCTATTACAACAATTACAGTCTCTCTCAACCTCGTTACTTTTGCAAGACTTGTAGAAGGTATTGGACTAAAGGTGGAACTTTAAGAAACATTCCTGTTGGTGGTGGTTGTAGAAAGAACAAAAAAGTTTCCACTACAAAAAAATCCAATGATTCACAACAACAACAACAACAACCACAAATTCAACAACCCATTTCTCAAAATCATCATCTTCTTCATGGCCCTTCTTCATCTTCATCTTCTTCACTTCATCACATTCATAACCCCACTGATCTTCATCTCTCATTTCCAGATCAAATTCAATTCCCACATTTCAATCCTCTCACTCCAAATTTCACCATTGGAATGCTTGAAACTCACCATCATCATCATCAACAAACTCGACCCATTGATTTCATGGACACAAAAATGGAAGCCATTGTTGGGAATAATGGTCATCATTACACTACAAACACTGATCATTTAGCCATGGTTGGTGGGTTAACTAGTGATCATCACATTACTGCTGCTGCTGCTGCTGCTGCTGCAACAAATTTCCATGGAATTTGCTCTCCTTATGGACTTTCACTTGATGGGAATAATATCAATCAAATGATGATTCCTTATGATCAACATCAACAAAATGAAGATCCAAATGGAATGGATGTCAAACCAAATACAAAGCTTTTGGCTTTGGAATGGCAAGATCAAGGAGGATGTTCAGAAAAAGTTGAATCTTATGGATATATAAATGGAATTGGGTCTTCATGGAATGGGATGATGAATGGATATGGACCATCAACAACCAACCCATTGGTGTAA 1002 38.72 MGLTSLQVCMDSSDWLQGTMNEESGMDSSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTTKKSNDSQQQQQQPQIQQPISQNHHLLHGPSSSSSSSLHHIHNPTDLHLSFPDQIQFPHFNPLTPNFTIGMLETHHHHHQQTRPIDFMDTKMEAIVGNNGHHYTTNTDHLAMVGGLTSDHHITAAAAAAAATNFHGICSPYGLSLDGNNINQMMIPYDQHQQNEDPNGMDVKPNTKLLALEWQDQGGCSEKVESYGYINGIGSSWNGMMNGYGPSTTNPLV* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5317986 5319596 + CsaV3_1G008490.1 Csa01g00849 515346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00849 333 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Csa01g00849 333 MobiDBLite consensus disorder prediction 114 130 - -
Csa01g00849 333 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 325 - -
Csa01g00849 333 MobiDBLite consensus disorder prediction 100 130 - -
Csa01g00849 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 325 IPR045174 GO:0003700|GO:0006355
Csa01g00849 333 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Csa01g00849 333 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00849 Csa01g00332 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00332 Csa-Chr1:2070673 Csa01g00849 Csa-Chr1:5317986 4.53E-35 dispersed
Csa01g00849 Csa-Chr1:5317986 Csa01g01310 Csa-Chr1:8448239 3.28E-38 dispersed
Csa06g01499 Csa-Chr6:12669120 Csa01g00849 Csa-Chr1:5317986 1.95E-32 dispersed
Csa06g01902 Csa-Chr6:17144445 Csa01g00849 Csa-Chr1:5317986 5.36E-34 dispersed
Csa06g02913 Csa-Chr6:25274806 Csa01g00849 Csa-Chr1:5317986 2.26E-32 dispersed
Csa06g03099 Csa-Chr6:26547288 Csa01g00849 Csa-Chr1:5317986 4.39E-32 dispersed
Csa06g03607 Csa-Chr6:29125934 Csa01g00849 Csa-Chr1:5317986 1.49E-32 dispersed
Csa01g00849 Csa-Chr1:5317986 Csa06g01656 Csa-Chr6:14567183 9.17E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30682 PF02701 zf-Dof 1.80E-33 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00849 - - csv:101223232 657.136