Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00850 ATGGGTTCTCCAGTCGAGGAAGAGGCGATTAATCCATTAACAGATGAAATTAAGGATTCTGGTGTCGAAAACTTTGATGATGGGAGCAAAGAGATGTTTGAAAAGAGGTCTGAGACACGAGAGCGGAAGAAGAGCAAGTACTTGTCTTTTCCGTATATAAACTGGGGACGGAAAGTTATGCCAGCTGAAACAGAAGATATTAAGTTTCTTAAAATTTCTGGTGAAGGCGAGGATGAAAATGCAGTTGAGGGCCAGAACGAAACCCCATCGCTATCTAAATGCAGTGGCAGGTTCTGGAAGAAGTGGTACAGGAATATCACCAGTGGTAGTGATGTCCCTGATAATCAAGACTTGATGAGTGCATCACCAGCGGAGTTTCTCTCTGAGCTTCACTTTACTGCAGTAAACTGTCTTTATCCAAATGACAATAACAACTTTGATGCAGTTGCTCAGTTCTTCTCCAGATTTAGAATTTTGATGTTTCATGATGAATCTGTCAATGGTGGTCAAAATGAGGCAATGGCTGCGGATTTATTTTTTCTTGGGGGAAAGGCGTCAGAGGTTAAGCATCCTTCTTCGGCTGTTAAATCTGGGATCAAGAAAAGGAAAAATCAGGCAAGTTCTATTATGAAAATGGAAGATACGAAATCCAAACAAGTTTCTGGTGATGTGGATTTGACTGGAAAAGCTGAAACAAGTCCTGCAGGAGATGCCGACGAAGAAAGCCCTCCGTCTTCCAATGTTGAATCAGACAAAGATAGAGAAAGCTTGTGGAGAGAATTCGTTGATAATCAAGACTTGATGAGTGGATCGCCAGCTGAGTTTCTTTCTGAGCTTCATTTTACTGCTGTAGATTGTCTTTATCCAAATGTAAACAACAACTTTGGTACAGTTGCTCAGTTCTTCTCCATATTTAGAATTTTAATGTTTTTGGGTGAAAAGGTGTCAGAGGATAAGCAGCAGCAGCAGCCTTCTTCGGCTGCTAAATCCGGGATCAGGAAAAGAAAAGGTCAGTCAAGTTCTATTAAGAAAATGGAAGAGATGAAATCCAAACCAGTGTCTGGTGATGTGGATTTGACTGGAAATGCTGAAATAAGTCCTGCAGGAGATGCACAGAAAAAAACCCCTTCGACTTCCAAGGTTAAATCAAAAAAAGATAAAGAGAGCTTGGGGAGATTGAAGACTAAGTCCCTTTCTGCCTTGTCAGATGTGAACATAACCCTTTCTTCCTGTAGCTTACTCGCAAAAGATTCACCTGAGGCTGGACCCCTCTCACCCAATGGTTTACCGAAGCGAAGGAAGAGAAGGAACAATGGAGTACATCCCCAGAGTAAACCAACAACTGAGATACCAGATTTAAATGGAAGTGGTGCCGTAGCTGGCTTGTTGGTTGAAGATCAGCAGGCCGTGAGTCATGTTGCTGCCCAGCTAAAGCGTGAGCCAAAAAGGAGAAGGAAACGTGGAGTTTCTAAGGAGAATTCAAAGGCGTCTACTGAATTCATAAATGTAAATGTGAATGACAGCAATAAACCTGGAGCGCCTAACCAGTCGGTGAACGATCAGACCATTGGCCAGGATCAGAGCAAATCTGGGGGCAAAAAGCGAAAGAGGAAGGAGAAACCACCCTTGGCAGATCCAGATGCTGTTTTATCTTATTCCAATGGAGTGGGTACTGACACCAGTCAAGGGAAAGATTCCCAGTTGACTAACAACCTTCCTCCGCAGCCTAAACCTAAAAGGAGGAGGAGGAGAAAAGGTCAAGCTAGTTTGAACCATCCAAATCCTTCTGACAGCAGATCATATATCTATAATAGAGTTGAAACTGATGGTGAAGGTTTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCTCCCTTGCCTCCGCGGGAGCAAGTTATTACTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGATACAGTTGAAAGATTCAACCGTTGAGATAGTTTTCCTCCGAAGCGCTGACGCTATGGAAGCCGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTTTAAAATATCAGCTCTATCATCTCTCAGCTCCCCCCAAGACGTCAGATTCGGACAGGGCTTGCACAGCACTGGCCTATCCGGCTTCTGAGGGCACTCTGAACCCATCAAAGTCTGCTGAATCAGGAAATCAAGCAGGTGATGCACCACCTATAGAGTTCATAAGGAAAAATCTTCAGATGATGACATCAATGCTTGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCCAAATTGGAGTGTGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCGGGGCCTTCCTCAACGTAA 2349 43.55 MGSPVEEEAINPLTDEIKDSGVENFDDGSKEMFEKRSETRERKKSKYLSFPYINWGRKVMPAETEDIKFLKISGEGEDENAVEGQNETPSLSKCSGRFWKKWYRNITSGSDVPDNQDLMSASPAEFLSELHFTAVNCLYPNDNNNFDAVAQFFSRFRILMFHDESVNGGQNEAMAADLFFLGGKASEVKHPSSAVKSGIKKRKNQASSIMKMEDTKSKQVSGDVDLTGKAETSPAGDADEESPPSSNVESDKDRESLWREFVDNQDLMSGSPAEFLSELHFTAVDCLYPNVNNNFGTVAQFFSIFRILMFLGEKVSEDKQQQQPSSAAKSGIRKRKGQSSSIKKMEEMKSKPVSGDVDLTGNAEISPAGDAQKKTPSTSKVKSKKDKESLGRLKTKSLSALSDVNITLSSCSLLAKDSPEAGPLSPNGLPKRRKRRNNGVHPQSKPTTEIPDLNGSGAVAGLLVEDQQAVSHVAAQLKREPKRRRKRGVSKENSKASTEFINVNVNDSNKPGAPNQSVNDQTIGQDQSKSGGKKRKRKEKPPLADPDAVLSYSNGVGTDTSQGKDSQLTNNLPPQPKPKRRRRRKGQASLNHPNPSDSRSYIYNRVETDGEGLGSLLLLTFSSEAPLPPREQVITTFSQFGSLKESEIQLKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSAPPKTSDSDRACTALAYPASEGTLNPSKSAESGNQAGDAPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLECDIEGLLKKVSSMAGPSST* 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5321745 5326440 - CsaV3_1G008500.1 Csa01g00850 515347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00850 782 MobiDBLite consensus disorder prediction 191 255 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 1 43 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 339 353 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 494 528 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 316 335 - -
Csa01g00850 782 PANTHER ALDOLASE-RELATED 25 207 - -
Csa01g00850 782 PANTHER ALDOLASE-RELATED 522 781 - -
Csa01g00850 782 PANTHER ALDOLASE-RELATED 263 443 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 553 574 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 377 391 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 316 391 - -
Csa01g00850 782 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 25 207 - -
Csa01g00850 782 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 263 443 - -
Csa01g00850 782 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 522 781 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 416 455 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 11 43 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 198 215 - -
Csa01g00850 782 MobiDBLite consensus disorder prediction 473 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00850 - - - csv:101223078 1459.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g373 . . Bda06g00495 . . . . Bma12g00944 Cmo13g01084 . . . . . . Cpe20g00105 . . . . . . . . . . . . . . . . . . . Lsi02g00371 Csa01g00850 Chy12g01456 Cme12g01896 . Blo15g00358 . . Bpe07g00736 . . . . . . Cma13g01043 . Car13g00875 . . . Bhi08g01202 . . . . . . Cla04g01112 Cam04g1164 Cec01g1675 Cco01g1723 Clacu04g1192 Cmu04g1172 Cre01g1470 . . . .
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00850 Csa_Chr01 FPKM 0.47482 0.491284 0.968197 0.953605 3.721974 4.092655 4.117384 1.193522 1.317586 1.063183