Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00852 ATGGCTAGTCCGGGGAAAAACCTAAAGCCTGAAATTTGTGGTTTAAAGGGATTGAATCAGGAACCTGATGATAAAAACCAGCTTGTTGACAAAGAAGCTGGCCTGAGTGGTGGTGAGAGGGATATGGCTCCGGTTACCGGGAATTCCATTCACAGGTCAGGTTCTCGTCCACAGCTAGACCTTAGCAAAGCAGAAATCCAGGGAAATTTTGAGGAGAGAGATCCCACGATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTGGCTCTTGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCTAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCGTTAAGCAGAGACTGGGATTATCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGCGGGAGGCTTCATTTTGTGAAGTTTGAGACAAGCAAGATTAATGAGTGTTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTTACAAAGATTTACCTCATTGGCATTCAGATGGCCCAGAAAATGAAAATGCCATCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGATCTTTTTAAAGAAAGACTTGGAGTTAGCATTGATAAAGAAGATGAGATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTAAAGGCAATACGCCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTTGTGCAACTTGACCACAATGAATTGTTTCCTTATCTGCTTGTTAACATTGGATCTGGCGTCAGCATGATCAAGGTTGATGGTGATGGGAAATTTCAGAGAGTTAGCGGGACAAATGTTGGAGGGGGCACTTACTGGGGCTTAGGAAGACTATTAACAAAATGTAATAGTTTTGATGAGTTGCTAGAGCTTAGTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGACATTTATGGTGGCATGGATTACTCTAAGATCGGTCTCTCTGCTTCAACAATTGCATCAAGTTTTGGCAAGACCATCTCAGTGAACAAGGAGCTTGAGGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAACATTGGACAGATTTCGTACTTGAATGCTCTCCGGTTTGGGCTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCCTATACCATGGATACAATTTCCTTCGCAGTTCACTTCTGGTCAAAAGGAGAAGCACAAGCAATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCCATGGGTGCACCATACACGGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAGAAAATTTCTTGGATGGAGAAATTCTTGCAGAAGAGAACAGAAATTACTGCACCTGTCCCTACGGCTCCCCCTGGAACTACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCTTGCGATCTGATGCAAGTGCCTTAAATGTTGGTGTACTCCATTTGGTTCCCACTTTGGAGGTGTTTCCACTGTTAGCTGATCCAAAGACATATGAGCCTAACACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTTCTTTCAGAGCATGTACCGGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGAGGGACTGATGATGCCAAGAGAAGAGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACGGCATATGGAAAGTTAGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCTTGAGGGAATTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAAAATGAGGCATCACTTGCCGTACTGCCTGACCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTGCTTACTCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGTTCTCGTGCTTGTGTTGATCTTTATCACAAGGGGACAATAATTGAGATTTACCGAATGAGTCGCAATAAGATGCAGAGGCCATGGCGGGTCGACGATTTTGATGCCTTCAGAGAGAGAATGTTAGGATCTGGGGATGAGAGACCCCCTCCACATAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCTTGGCAAGGGAACTCCTCCGACGAGGAACAGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCCTAAATGATGTAACTGCAATGGAGCTTCCTGACATTGTAGCTGAGGCTGCCAAGCACTGTGACATACTTCGTAGAGCTGCTGAAGCAGGGGGATTGATTGTGGATGCCATGATCGACTCTGCAGACGGTTCTAAAGAGGGATCATCTTTTGTTCCTTTGATGGTTGTTGAAAATGGGTGTGGTAGTCCATGTATAGATTTAAGACAAGTCAGCTCTGAGTTGGCTGCTGCAGCTAAAGACGCTGATTTGGTAATCTTGGAAGGGATGGGGAGAGCTCTTCACACAAACTTCAATGCCCAATTTAAATGTGATGCTTTGAAGCTTGCCATGGTGAAAAATCAGAGGCTGGCAGAAAAATTGATCAAAGGAAACATATATGACTGTGTTTGCAGATATGAACCATCACATTGA 2736 43.79 MASPGKNLKPEICGLKGLNQEPDDKNQLVDKEAGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSVKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGAYKDLPHWHSDGPENENAIIKATGGGAYKFADLFKERLGVSIDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISVNKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPTAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHVPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAFRERMLGSGDERPPPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKEGSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAQFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPSH* 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5327853 5340570 - CsaV3_1G008520.1 Csa01g00852 515349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00852 911 Gene3D - 548 632 IPR035073 -
Csa01g00852 911 Gene3D - 315 424 - -
Csa01g00852 911 SUPERFAMILY AF1104-like 526 909 IPR036075 -
Csa01g00852 911 TIGRFAM panK_eukar: pantothenate kinase 88 434 IPR004567 GO:0004594|GO:0005524|GO:0015937
Csa01g00852 911 MobiDBLite consensus disorder prediction 1 60 - -
Csa01g00852 911 Pfam Fumble 88 433 IPR004567 GO:0004594|GO:0005524|GO:0015937
Csa01g00852 911 Pfam Damage-control phosphatase ARMT1-like domain 618 897 IPR002791 -
Csa01g00852 911 Gene3D - 80 243 - -
Csa01g00852 911 PANTHER PANTOTHENATE KINASE 32 833 IPR004567 GO:0004594|GO:0005524|GO:0015937
Csa01g00852 911 PIRSF PanK_long 42 911 IPR015844 GO:0004594|GO:0015937
Csa01g00852 911 SUPERFAMILY Actin-like ATPase domain 202 435 IPR043129 -
Csa01g00852 911 MobiDBLite consensus disorder prediction 23 37 - -
Csa01g00852 911 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 712 909 - -
Csa01g00852 911 SUPERFAMILY Actin-like ATPase domain 86 230 IPR043129 -
Csa01g00852 911 PANTHER PANTOTHENATE KINASE 2 32 833 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00852 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - csv:101203117 1771.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00208 Csa-Chr7:1662425 Csa01g00852 Csa-Chr1:5327853 3.73E-60 transposed
Csa01g00852 Csa-Chr1:5327853 Csa05g02334 Csa-Chr5:25720349 1.25E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00852 Csa_Chr01 FPKM 0.186147 0.298391 0.0 0.0 0.0 0.0 0.177889 0.0 0.0 0.0