Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00855 ATGGAGGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATAAGAGGAAGACTTCTGTGCTACAGACAGGATTGGACTGGTGGCTTTCGCACCGGTATCAGGATCTTGGCCCCAACAACGTACATATTCTTTGCTTCAGCAATTCCGGTTATATCGTTTGGGGAGCAGCTAGAAAGGAACACGTATGGGACTCTAACTGCTGTACAAACTCTAGCATCAACAGCACTGTGTGGCATCATCCACTCAGTCTTTGGAGGACAACCTCTGCTCATCCTTGGCGTTGCTGAACCAACTGTTTTGATGTATACGTTCATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACGGGATGGGTGTGTGTATGGACAGCCCTTTTGCTTTTTTTGCTAGCGGTGTTGGGTGCATGCTCCCTGATCAATAGGTTCACACGTGTTGCTGGAGAATTGTTTGGTCTGCTAATTGCCATGCTCTTCATGCAGCAGGCGATACGTGGTGTAGTGGAGGAATTCGGCATACCCCAAAGGGAAAATCCTAATCAGGTGTCACTCCAAGCTCCCTGGCGCTTTGGCAATGGAATGTTTGCATTAGTGCTGTCCTTTGGGCTTCTGCTAACTGCCCTAAAAAGCCGCAAGGCTAGATCATGGCGCTATGGAACTGGTTGCCTACGTGGCTTTATCGCTGATTATGGAGTTCCACTTATGGTGCTCATATGGACAGCTTTATCTTACATTCCAGTCAACAATGTACCACTTGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCATACTCTAATTGGACAGTTATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCTTATCATTATGATCTTCTTCTCCTAGGTTTCCTTGTTATTCTGTGTGGACTTATTGGCATACCACCTGCCAATGGTGTAATTCCTCAGTCTCCTATGCACACGAAAAGCTTAGCTACCCTCAAACATCAGCTCTTGCGAAGCAAGCTGGTAGCAGCAGCACGACAAAGTTTCCGTAAAAATTCAAATTTAAGTCAGTTTTACCAGAACATGCAAGAGGCATACAACGGGATGCAGACTCCTTTAATTTATCAAAATCCACCAGTTGCGGGGCTGAAGGAGTTGAAGGATTCCACCATCCAACTAGCTTCAAGAACTGGCTACATTGATGCACCTGTTGATGAAACCGTTTTTGATGTGGACAAAGATATTGATGATCTTCTGCCAGTAGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAGTAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAAGATCCCAACTTCGGTTCTTTGGGGTTACTTTGCTTTCATGGCAATTGAGAGCTTGCCTGGAAATCAATTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTTCTAGAAACTGTCCCCTTCAAAACAATTGCCACTTTCACCTTGTTTCAGACAGTATATTTGCTGATGTGTTTTGGTTTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCATTGTTGATCATGCTTCTTGTCCCTGTGCGGCAGTATTTGCTTCCCAAGTTCTTCAAAGGTGCTCATCTCCAGGACTTGGATGCTGCTGAATATGAGGAAGCTCCTGCAATCGCTTTTAATCCATCATTCGAAGATCGAATGGGAAGAACTCCCAATATTGATGATGGTGAAATACTTGACGAGATGATCACAAGAAGCCGTGGCGAGATTCGACGTACGCCAAGTTCAAAAGTGACAAGCTCATCCCCAACTACTCTAGAGGGCATCAAATCAATCTATAGTCCACAGATACCACAGAAACTTTATAGTCCAAGAATCAATGAGCTGAGAAGGGAGAGAAGTTCTTTATCTCCTGGAAAAGGACTTGATTTCAAGCTAAATGGCAGTCCTAGTCCTAGTGAAGAGCCAGGGCCAGGACCTTCTTTTAGAAATTAG 2154 44.15 MEETFFPFRGIKNDIRGRLLCYRQDWTGGFRTGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSVFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTALLLFLLAVLGACSLINRFTRVAGELFGLLIAMLFMQQAIRGVVEEFGIPQRENPNQVSLQAPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLIWTALSYIPVNNVPLGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRSKLVAAARQSFRKNSNLSQFYQNMQEAYNGMQTPLIYQNPPVAGLKELKDSTIQLASRTGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRRTPSSKVTSSSPTTLEGIKSIYSPQIPQKLYSPRINELRRERSSLSPGKGLDFKLNGSPSPSEEPGPGPSFRN* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5356685 5362947 + CsaV3_1G008550.1 Csa01g00855 515352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00855 717 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Csa01g00855 717 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Csa01g00855 717 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016021
Csa01g00855 717 Gene3D Helical hairpin bin 18 60 - -
Csa01g00855 717 MobiDBLite consensus disorder prediction 677 717 - -
Csa01g00855 717 PANTHER BORON TRANSPORTER 2-RELATED 1 692 - -
Csa01g00855 717 PANTHER ANION EXCHANGE PROTEIN 1 692 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00855 Csa-Chr1:5356685 Csa03g02859 Csa-Chr3:27379811 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00855 K24194 - csv:101203606 1404.42