Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00856 ATGCAGAGCTCTGCGTTCACCTTCTCCTCTTCTCTTCCTCTTCTCAAGCCTCGCCGGCCTCATACTTCCTCCTTCACTTCTCCCTCCAACTCAATTCGGTTATCTTCTTCGTCTTCCACAAATTCCAGAGATCTTGGAGACCTTAACAATGTTGGCATCCCTTCCTCTTGGCCCCGCCGATCTTGGACTCTCTCTTCATCTCCTTTTTCGTCATCCAAACTCCGGCCATGGAGTGGTGTACCCTCGCTTGCTTCGGATTCCGATGCGAGTCACTTCAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGAAGAGTCTGCGAGTGATGGCGGAAGCTTAATGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCTTATGGTACCTTTTCAACATCTACTTTAACATCTACAATAAGCAGGTTCTCAAAGTGTATCCATTCCCTGTAACTGTCACCGGAGTTCAATTTGCTGTGGGCACTGTACTTGTTCTCCTCATGTGGGGACTTAATCTCTACAAAAAACCAAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTGCCGTTGGCAATTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCAGTATCGTTCACTCACACAATCAAAGCCATGGAGCCATTTTTTTCAGTTGTCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCATGGGTCATTTTATCCCTTCTGCCAATCGTTGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCCGGATTTTCGAGCGCAATGGCATCTAATGTGACCAATCAATCTCGTAATGTTCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGATTCGATGGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTACTAACCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACATTCAATCAGCTGGATTGAACATGAATCAACTATACACTAGGTCTCTTCTAGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCCGTTACCCACTCGGTAGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCCGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTATTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTCTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1260 45.95 MQSSAFTFSSSLPLLKPRRPHTSSFTSPSNSIRLSSSSSTNSRDLGDLNNVGIPSSWPRRSWTLSSSPFSSSKLRPWSGVPSLASDSDASHFKVQATAVPDSSEESASDGGSLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTGVQFAVGTVLVLLMWGLNLYKKPKISGAQLAAILPLAIVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGETPTPWVILSLLPIVGGVALASATEASFNWAGFSSAMASNVTNQSRNVLSKKVMVKKEDSMDNITLFSIITVMSFFLLTPVAIFMEGVKFTPAYIQSAGLNMNQLYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGIALAGVFLYSRVKRIKAKPKTA* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5365097 5368975 - CsaV3_1G008560.1 Csa01g00856 515353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00856 419 MobiDBLite consensus disorder prediction 1 57 - -
Csa01g00856 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Csa01g00856 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 252 - -
Csa01g00856 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Csa01g00856 419 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 60 394 - -
Csa01g00856 419 PANTHER SOLUTE CARRIER FAMILY 35 60 394 - -
Csa01g00856 419 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00856 Csa-Chr1:5365097 Csa03g00996 Csa-Chr3:8059633 9.63E-72 dispersed
Csa01g00856 Csa-Chr1:5365097 Csa05g01908 Csa-Chr5:22240296 4.73E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00856 K15283 - csv:101203848 758.829