Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00862 ATGGGGTCCTGGTTCAGCTCAAACAAATTCAGTAAAGAAGAGTTGGAATTAGCTCTTAACGAAGTCAAGAAGATAGTCTCCACTGACCCTGTTGTTGTTTTCAGTAAGACTTATTGTGGGTTTTGCTCGAGTGTCAAGAAGCTGCTCACACAGCTTGGAGCTAGGTATAAGGTCATTGAATTGGACCAGAAAAGTGATGGAGATAAAATTCAGTCAGCTTTAGCGGAGTGGACTGGCCAAACCACGGTACCTAATGTGTTTATTGGAGGAAAGCACATCGGTGGTTGCGATGCGGTTACAGAGAAGCATCACAGAGGTCAGCTAGTGCCACTTCTTACTGAGGCCGGTGCCATTGCCGGTAACTCTGCTCAGCTGTAG 378 46.3 MGSWFSSNKFSKEELELALNEVKKIVSTDPVVVFSKTYCGFCSSVKKLLTQLGARYKVIELDQKSDGDKIQSALAEWTGQTTVPNVFIGGKHIGGCDAVTEKHHRGQLVPLLTEAGAIAGNSAQL* 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5396802 5399161 - CsaV3_1G008620.1 Csa01g00862 515359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00862 125 PRINTS Glutaredoxin signature 31 49 IPR014025 -
Csa01g00862 125 PRINTS Glutaredoxin signature 76 89 IPR014025 -
Csa01g00862 125 PRINTS Glutaredoxin signature 90 103 IPR014025 -
Csa01g00862 125 PANTHER GLUTAREDOXIN 2 1 125 - -
Csa01g00862 125 Gene3D Glutaredoxin 10 125 - -
Csa01g00862 125 Pfam Glutaredoxin 31 93 IPR002109 -
Csa01g00862 125 PANTHER GLUTAREDOXIN-C1 1 125 - -
Csa01g00862 125 SUPERFAMILY Thioredoxin-like 20 118 IPR036249 -
Csa01g00862 125 TIGRFAM GRX_euk: glutaredoxin 31 111 IPR011899 -
Csa01g00862 125 CDD GRX_GRXh_1_2_like 30 111 - -
Csa01g00862 125 ProSiteProfiles Glutaredoxin domain profile. 19 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00862 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101205064 253.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00862 Csa-Chr1:5396802 Csa06g00722 Csa-Chr6:5882779 1.76E-27 dispersed
Csa02g00735 Csa-Chr2:6006714 Csa01g00862 Csa-Chr1:5396802 1.49E-09 transposed
Csa03g03054 Csa-Chr3:28814614 Csa01g00862 Csa-Chr1:5396802 8.90E-09 transposed
Csa01g00862 Csa-Chr1:5396802 Csa05g01907 Csa-Chr5:22234444 6.53E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00382 Csa01g00862 . Cme12g01684 . . . Bda14g00807 . Bpe15g00641 Bma03g00778 . Sed01g1640 . . . . . Car18g00168 Cpe09g01018 . Bhi08g01625 Tan05g1994 Cmetu12g1182 Lac10g0460 Hepe07g2217 . . Cla01g01309 Cam01g1421 Cec01g1455 Cco01g1469 Clacu01g1374 Cmu01g1282 Cre01g1257 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003081 2 2 1 3 2 1 2 1 0 1 2 1 1 2 2 1 1 2 2 1 2 2 2 2 2 2 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00862 Csa_Chr01 FPKM 0.0 0.0 3.024744 0.0 0.0 0.0 0.0 0.0 0.0 2.727231