Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00871 ATGCATGCAAAACAGAGGACACTATTCTTCATAATAGTCTTGCTTTTCTCCTTCTCTGTATTCGTTTCTGCTGTCAACCATCAAGGCAAAGCTCTCCTGTCATGGAAACAATCTCTGAACTTCTCGGCCCAAGAGTTAAACAACTGGGATTCCAATGATGAAACTCCCTGTGAGTGGTTTGGAATCATCTGCAACTTTAAACAGGAAGTTGTGGAAATAGAATTCAGGTACGTGAAATTGTGGGGTAACATCCCCACCAATTTTAGCTCATTGGTGACCCTGAAAAAGCTCATCTTCGTGGGAACTAACATCACTGGTACAATTCCTAAAGAGATTGGCGATTTAAGGGAATTAAATACATTGGACCTGAGTGACAATGGCTTGACAGGAGAAATCCCAATTGAGATATGTGGTTTGCTCAAGCTTGAAAACGTCGACCTCAGCTCAAATAGACTCGTGGGCCTGATTCCAGCTGGAATTGGAAATCTCACGATCCTTAAAGAGCTTGGTCTACATGATAATCAACTTACCGGTCAAATTCCCAGAAGCATAGGTAACTTGAAGCAGCTTAAGAATATTAGAGCTGGTGGAAACAAAAACATCGAAGGCAATATACCTCCAGAAATTGGCAACTGTACCAATTTGGTGTATGCAGGCTTTGCTGAAACCAGAATTTCAGGCTCTCTGCCACCAAGTTTAGGCCTACTCAAGAAGCTCGAAACACTCGCATTGTACACAACCTTTCTCTCTGGCCAAATTCCTCCTGAAATTGGAAACTGCAGTGGGCTCCAATACATGTATCTCTATGAAACGTTGCTCACAGGTTCTATTCCGACCAGTTTTGGGAATCTCCAGAACCTGCTAAATCTGTTTCTATATAGAAATAGATTAACAGGCACGTTGCCAAAGGAGCTTGGAAACTGTTATCAATTATTCGACATCGACATTTCAATGAATTCTTTGACGGGAAATATTCCAACCACATTTAGTAACTTGACTTTGCTACAAGAATTGAATTTGGGAATGAATAATATTTCAGGCCAGATACCAGCCGAGATTCAAAATTGGCGGGAACTTACTCATTTGATGCTTGACAACAATCAAATCACGGGTTTGATACCTTCAGAACTAGGGACTTTGAAAAATCTCAGAATGTTGTTCTTGTGGCATAACAAGCTTGAAGGAAATATTCCATCTTCAATTTCCAACTGTGAGATGCTTGAAGAGATGGATTTATCGATAAATGGCTTGACAGGTCACATTCCTGGACAAATTTTCCACCTCAAGAAGCTAAATAGCCTCATGCTCCTCTCCAACAATCTATCAGGCGTTATACCTACAGAGATCGGAAATTGCTTGTCGCTAAATCGTTTCAGAGTTAGCAAAAACTTGCTCTTCGGCGCTCTCCCACCACAGTTTGGGAATTTGAAGAATCTGAGTTTCTTGGACCTCGGAGATAACCAGTTCTCTGGAGTAATACCTGATGAGATTTCCGGCTGCAGGAATCTAACATTCATTGATATACACTCCAACACCATTAGTGGAGCTTTACCCTCAGGTCTCCACCAACTTATTTCCCTTCAAATCATTGACTTCTCAAATAATGTAATTGAAGGGAACATAGATCCTGGTCTCGGACTGTTAAGCTCATTGACAAAACTCATTCTGTTCAACAATCGATTCTCCGGACCAATCCCTAGCGAGCTGGGCGCTTGCTTGAGGTTACAGTTATTGGACCTCAGTGTTAATCAACTTTCCGGTTATCTTCCGGCAAAGCTAGGGGAAATTCCAGCGCTAGAAATCGCTCTAAACCTGAGTTGGAACCAACTTAACGGTGAGATACCGAAGGAGTTCGCCTATTTAGACAGACTCGGAATCTTAGACCTCTCACACAATCACCTTAGCGGCGACCTCCAAACCATCGCCGTAATGCAGAATCTGGTGGTACTCAACATCTCCGACAACAATTTCTCTGGCCGAGTGCCGGTGACTCCCTTCTTCGAGAAACTCCCGCCCAGTGTCCTATCCGGCAATCCAGACCTCTGGTTCGGCACCCAATGCACCGACGAAAAGGGAAGCAGAAATTCAGCACATGAATCAGCGTCTCGTGTAGCGGTGGTATTGCTGCTATGCATAGCTTGGACTCTTCTCATGGCGGCGCTTTACGTGACCTTTGGATCGAAAAGAATAGCACGAAGACGCTACTACGGTGGCCACGATGGCGACGGCGTCGATAGCGACATGGAGATTGGCAATGAACTCGAATGGGAGATGACGCTCTATCAGAAGCTCGACCTTTCAATTTCTGACGTGGCAAAGAAACTGACAGCTTGCAACATCCTCGGTCGTGGCCGATCCGGCGTCGTTTACCAGGTCAACATCGCCCCCGGTTTAACCATCGCCGTCAAACGGTTCAAAACCTCGGAGAAATTCGCCGCCGCCGCATTCTCTTCCGAAATCTCAACTCTAGCCAGTATCCGACACCGGAATATCATACGATTGCTCGGTTGGGCGGTCAATCGTAAAACGAAATTGTTATTCTATGACTACTGGCCACAAGGAAACCTCGGCGGTTTGTTACACGAGTGCAGCACCGGCGGTTACGTAATCGGCTGGAATGCTCGGTTCAAGATTGCGATGGGATTGGCCGACGGATTGGCTTACTTGCATCACGACTGTGTGCCGGCGATTTCGCATCGGGACGTGAAAGTCCAAAACATACTATTGAGCGACGAATACGACGCCTGCCTTACAGATTTTGGATTCGCAAGGTTCACTGAAGACAATCTAAACGAACCATCGTCGGCAAATCCGCTATTCGTCGGATCTTACGGCTACATTGCACCGGAATATGGTCATATGCTGAAAGTAACAGAGAAGAGCGATGTGTATAGCTACGGAATCGTTCTCTTAGAAATGATTACCGGTAAAAAGCCAGCCGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAACATCATCTACGCAGCCAGAACAATCCAATCGAGCTATTGGATCCAAAACTTAAAATCCATCCCAACGCCGAAATTCATGAAATGCTTCATGTCCTCGAAATCGCTCTTATATGCACCAATCATCGCGCCGACGATCGGCCTATGATGAAGGACGTCGCTGCATTATTGAGAAAAATTCAAACCGAGTCTACGATGATGAGGATCAAGGGAATCAAACCTGGTAATAGATTGAAGAGATTCGAAATTCAATCGTATTAA 3243 44.84 MHAKQRTLFFIIVLLFSFSVFVSAVNHQGKALLSWKQSLNFSAQELNNWDSNDETPCEWFGIICNFKQEVVEIEFRYVKLWGNIPTNFSSLVTLKKLIFVGTNITGTIPKEIGDLRELNTLDLSDNGLTGEIPIEICGLLKLENVDLSSNRLVGLIPAGIGNLTILKELGLHDNQLTGQIPRSIGNLKQLKNIRAGGNKNIEGNIPPEIGNCTNLVYAGFAETRISGSLPPSLGLLKKLETLALYTTFLSGQIPPEIGNCSGLQYMYLYETLLTGSIPTSFGNLQNLLNLFLYRNRLTGTLPKELGNCYQLFDIDISMNSLTGNIPTTFSNLTLLQELNLGMNNISGQIPAEIQNWRELTHLMLDNNQITGLIPSELGTLKNLRMLFLWHNKLEGNIPSSISNCEMLEEMDLSINGLTGHIPGQIFHLKKLNSLMLLSNNLSGVIPTEIGNCLSLNRFRVSKNLLFGALPPQFGNLKNLSFLDLGDNQFSGVIPDEISGCRNLTFIDIHSNTISGALPSGLHQLISLQIIDFSNNVIEGNIDPGLGLLSSLTKLILFNNRFSGPIPSELGACLRLQLLDLSVNQLSGYLPAKLGEIPALEIALNLSWNQLNGEIPKEFAYLDRLGILDLSHNHLSGDLQTIAVMQNLVVLNISDNNFSGRVPVTPFFEKLPPSVLSGNPDLWFGTQCTDEKGSRNSAHESASRVAVVLLLCIAWTLLMAALYVTFGSKRIARRRYYGGHDGDGVDSDMEIGNELEWEMTLYQKLDLSISDVAKKLTACNILGRGRSGVVYQVNIAPGLTIAVKRFKTSEKFAAAAFSSEISTLASIRHRNIIRLLGWAVNRKTKLLFYDYWPQGNLGGLLHECSTGGYVIGWNARFKIAMGLADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFTEDNLNEPSSANPLFVGSYGYIAPEYGHMLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQHHLRSQNNPIELLDPKLKIHPNAEIHEMLHVLEIALICTNHRADDRPMMKDVAALLRKIQTESTMMRIKGIKPGNRLKRFEIQSY* 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5443326 5446650 - CsaV3_1G008710.1 Csa01g00871 515368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00871 1080 Pfam Protein kinase domain 779 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00871 1080 Gene3D Ribonuclease Inhibitor 181 264 IPR032675 -
Csa01g00871 1080 SMART serkin_6 775 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00871 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1063 - -
Csa01g00871 1080 Gene3D Ribonuclease Inhibitor 428 696 IPR032675 -
Csa01g00871 1080 SUPERFAMILY RNI-like 73 415 - -
Csa01g00871 1080 Gene3D Transferase(Phosphotransferase) domain 1 852 1068 - -
Csa01g00871 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Csa01g00871 1080 SMART LRR_typ_2 644 677 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 115 139 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 332 355 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 548 572 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 428 452 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 476 500 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 284 308 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 380 404 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 163 187 IPR003591 -
Csa01g00871 1080 SMART LRR_typ_2 356 379 IPR003591 -
Csa01g00871 1080 SUPERFAMILY Protein kinase-like (PK-like) 757 1051 IPR011009 -
Csa01g00871 1080 PANTHER OS01G0170300 PROTEIN 8 1063 - -
Csa01g00871 1080 SUPERFAMILY RNI-like 349 660 - -
Csa01g00871 1080 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Csa01g00871 1080 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Csa01g00871 1080 Gene3D Ribonuclease Inhibitor 265 427 IPR032675 -
Csa01g00871 1080 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Csa01g00871 1080 Gene3D Phosphorylase Kinase; domain 1 750 850 - -
Csa01g00871 1080 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00871 1080 Pfam Leucine rich repeat 357 417 IPR001611 GO:0005515
Csa01g00871 1080 Pfam Leucine rich repeat 141 199 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00871 Csa01g00130 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00871 Csa-Chr1:5443326 Csa02g00988 Csa-Chr2:9467191 0 dispersed
Csa01g00865 Csa-Chr1:5408357 Csa01g00871 Csa-Chr1:5443326 1.59E-24 proximal
Csa01g00130 Csa-Chr1:766752 Csa01g00871 Csa-Chr1:5443326 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77767 PF00069 Pkinase 5.90E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00871 - - csv:101205934 2071.97