Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00875 ATGGGATCAACAACAACAAGCAACCATTATTACAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGCAGGCTGTGTTTTTGCACCCTATTTTCCGCCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTTGGAGCGAGTAACGTGGCGAAGCTCTTGAACGAAGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGTTGGCCTACGAAGCTGAGGCAAGAATCAGAGATCCTGTTTATGGGTGTGTTGGAGCCATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTTCAAAAGGAACTTGATGCTGCTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCTTTTTGCCTCACTCTCAGATAATTAATACTCCTCATCATCCAGTGATTTGGAATAATAATAGTAATTATAATATCAACAATCATAATGATATTAATAATCCTTCTATGTATTTTAATGGAGGAATTTGA 501 40.12 MGSTTTSNHYYSPCAACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCTDFSTPFLPHSQIINTPHHPVIWNNNSNYNINNHNDINNPSMYFNGGI* 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5466501 5468281 - CsaV3_1G008750.1 Csa01g00875 515372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00875 166 Coils Coil 92 112 - -
Csa01g00875 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Csa01g00875 166 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 6 148 - -
Csa01g00875 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 148 - -
Csa01g00875 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00875 Csa01g00123 CCT
Csa01g00875 Csa01g00123 ECH
Csa01g00123 Csa01g00875 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00875 Csa-Chr1:5466501 Csa02g00714 Csa-Chr2:5807886 2.66E-53 dispersed
Csa01g00123 Csa-Chr1:692578 Csa01g00875 Csa-Chr1:5466501 2.48E-68 wgd
Csa01g00875 Csa-Chr1:5466501 Csa03g03970 Csa-Chr3:34700634 1.87E-63 wgd
Csa01g00875 Csa-Chr1:5466501 Csa05g01896 Csa-Chr5:22166489 6.93E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30683 PF03195 LOB 7.20E-42 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00875 - - zju:107418298 212.616