Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00876 ATGCGGCTTCAATTGAACGGAGAAATCCCTTTAGTTCTTCACCCAATTCAAAATTCCCTCCATTTTTTCAAACCCATTTCTCCAAATCTCATTTCCTTTCAACAAAAACAGATCAAGCGTTCCCAATTCAATCGGGTTAGAGTTCAATTCCACCAGACCCAATCTTCAAACCCTAAGAAACGGACCCAAGACGACGGAATTCCATCAGACGACGTCAAAATCCTCGCCAAATTCAAATCCCGCCACAATTTCATCAGAGTTCTCGAAGTTTCCCGAAGAGCTGAGCACCCACTTGCAGGTTCCAGATTGCTCCTTCTCGATGCTCCTGGTAACATTCACAGCATTTCATTCCTTTTCAAATCACTCACAAACACTTACTTCGATGTCTTCGCCACATTGCCGCCGATTCTACCTTCGGGACCCATCGGAATCCTCGGATTCGGCGCCGGCTCCGCCGCTCGATCGATCCTAAAGCTATATCCTGAGGTAGTGGTTCATGGGTGGGAGCTCGATCCTTCTGTAGTAGCCGTTGGGAGGGAGTTTTTCGGTGTATCGAAGCTGGAAAAAAAGTACCCAGATAGGCTTTTTATCTACATTGGGAATGCTCTGAATGCAAATGTGACAGGGGGATTTGCAGGGATTTTGGTTGATCTGTTTAGTGAAGGGAGTCTGATTCCTGAACTTGAAGATCCAAATACATGGAGAATGCTCGAAAGGTGTTTGATGAAAGGCGGGAGAGTGATGGTGAATGTTGGGGGCAGTTGTGTTGAGGCTGAGGACATTAGGAGAGATGGGAAAGTTGTAATGGAACAAACTTTGAAAGCAATGCATCAAGTTTATGGAAAGAAATTATGGGTTTTGAGACTTGGAAATGGCGAAGATGACAGTTCCTTAGCTCTCACTGGTGATTTGCCGGACATTGTTGCTTGGAAGAAGTTGCTTCCAAGGTCTTTGAGGTTCTATGCTGATATGTGGACTCTGTATAATGGTGCATAA 996 45.08 MRLQLNGEIPLVLHPIQNSLHFFKPISPNLISFQQKQIKRSQFNRVRVQFHQTQSSNPKKRTQDDGIPSDDVKILAKFKSRHNFIRVLEVSRRAEHPLAGSRLLLLDAPGNIHSISFLFKSLTNTYFDVFATLPPILPSGPIGILGFGAGSAARSILKLYPEVVVHGWELDPSVVAVGREFFGVSKLEKKYPDRLFIYIGNALNANVTGGFAGILVDLFSEGSLIPELEDPNTWRMLERCLMKGGRVMVNVGGSCVEAEDIRRDGKVVMEQTLKAMHQVYGKKLWVLRLGNGEDDSSLALTGDLPDIVAWKKLLPRSLRFYADMWTLYNGA* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5470014 5471359 - CsaV3_1G008760.1 Csa01g00876 515373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00876 331 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 34 327 - -
Csa01g00876 331 Gene3D Vaccinia Virus protein VP39 85 302 IPR029063 -
Csa01g00876 331 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 34 327 - -
Csa01g00876 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 73 282 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00876 - - - csv:101205232 653.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00876 Csa-Chr1:5470014 Csa07g01231 Csa-Chr7:12180360 3.95E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g805 Blo04g00724 . . . . . . . Cmo13g00897 . . . . . . Cpe20g00260 . . . . . . . . . . . . . . . . Cone16ag0080 . . Lsi02g00403 Csa01g00876 Chy12g01246 Cme12g01669 . . . . . Bpe15g00648 Bma03g00774 . Sed08g2531 . . Cma13g00865 . Car13g00708 . . . Bhi08g01651 Tan05g1979 Cmetu12g1847 Lac10g0482 Hepe07g2204 . . Cla01g01324 Cam01g1405 Cec01g1437 Cco01g1487 Clacu01g1389 Cmu01g1298 Cre01g1242 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012584 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00876 Csa_Chr01 FPKM 1.04023 0.824594 0.352561 0.450206 2.358159 2.498979 2.649948 0.0 0.077288 0.0