Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00879 ATGGCTGCCGCAGCTCCTCCTCCGGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGAAGAAGGAGCAATTCTTCACGAGTTCACTCCTCCGATTCTGTTAGCCGATAAGATTCTGAGATTAGCTCAAGAAGCAGTTTCTTTAAGACAAGAATGCGTTGACTTAGCTAAACAAGTCGATAAAATCTACCGGATGCTTCAAGCCACCGTTCGTTTAATCACCACCACCACACAGCCGTTGTACGAACGCCCAATTCGCCGGATCGTGGCCGATGTCTCGAAGAATCTCGATCGTGCTTGGAGCTTTGTCAGCAAGTGCCGCCATGGTGGGTTTCTAAGGCAAGTTTTCTCGATGACTACCATCGCTGATTTTCGTAAGGTTTCTAGTCTTCTTGAATCTTCCATTGGTGATATGAAATGGCTTCTTTCAATTTTTGATTCCGATGGCACTGTTGGGCTGCCTCCGATTGCGAGTAATGACCCGACTTTAGCCTATATTTGGCCGAATATCGCCACAATCCAAATGGGTTCTGTTAGAAATCGGGTCGAAGCTGCAAATCAATTAACCTTGCACACTCGTGGGAACGATCGGAATCAAAAAATCGTAATGGAAGAAGGTGGCGTTCCGCCGTTGCTTAAATTGCTAAAAGAATACTCCTCCCCTGATGCCCAAATCGCCGCTGCTAATGTTCTTATTAACGTCGCTTCTGTTACCGATAGGGTTGAATCGATTGTTAATATTCCTGGGGTTCCGATTATTGTTCAAGTTCTTAATGATTCCCCTATGAGGGTTCAGATTATTGTTGCGAAATTGGTTTCCAAAATGGCGGAACTTAGTTATCTTGCTCAAGAAGAGTTTGCTAGAGAGAACGTAACTAAACCATTAGTTACTTGTTTATCGATTGATATGGTTCTTGATGATCCTAAGCTTCAATTGGGGAAACCCAGTTTTCATTCAGTGGTTGAGATTAATAAGGAGCTTGCTGGCAAAAATTTGAATACTTCACTGAATTCGTCTTCAACTTCTTCACATTCTGATAGTAGTAGCCGAGGGGGGAATCAGAGGAAGGAGAAAGAGGTTGAGAGCTCTGAAGTTAAGCTTCAGCTTAAAGTGAATTGTGCTGAAGCTCTTTGGAGACTCTCTAAAGGGAGCTTAATGAATAGTCGAAAAATTACCGAGACAAAAGGGTTGTTGTGTTTGGCGAAGATCATTGAGAATGAGGGAGGGGAGTTGCAATACAATTGCTTGATGACAGTTATGGAGGTTACAGCTGTTGCAGAGTCCAAACCTGACCTTAGACATGCTGCTTTCAAGATCACTTCACCGGCTCCAAAAGCTGTTCTCGATCAACTTTCGAGAATGATTCACAGGGATAGTGATCCAGTCTTGCAAGTTCCTGCTATTAAATCCATTGGTTCTCTTGCCAGGATTTTTCCTGCAAAGGAATCACAGATTATTAATCTTTTGGTTTTGCAAATGAAGAGTATGGACATGGATGTGGCCATTGAGGCTGTTATTGCATTAGGGAAGTTTGCTTGCCCTGAGAATTATAACTGTGTAGCACATTCGAAATCGCTTATCGAGTTTGGTGGTGTTCCTCCTCTAATGAAACTTTTAAAGCAAAATGATCAGGCTCAAGTTCCTGGTCTAATTCTGCTATGTTATCTTGCACTGAGCGTAGGTAATAGCAAGGTTTTAGAACAGGCTCATGCCTTGAATGCAATGAAGGGGATGGCTCGTCTTGTCTTCTCTCATCCCGACTTGCACGAATTATATGCCAAAGCCATACACCACCTTACTCTTTATCAGGCTGGAGCTCATCATATCCACAGACATAGTTTCTCACCCTAA 1848 43.45 MAAAAPPPAAAAAAAVAAEEGAILHEFTPPILLADKILRLAQEAVSLRQECVDLAKQVDKIYRMLQATVRLITTTTQPLYERPIRRIVADVSKNLDRAWSFVSKCRHGGFLRQVFSMTTIADFRKVSSLLESSIGDMKWLLSIFDSDGTVGLPPIASNDPTLAYIWPNIATIQMGSVRNRVEAANQLTLHTRGNDRNQKIVMEEGGVPPLLKLLKEYSSPDAQIAAANVLINVASVTDRVESIVNIPGVPIIVQVLNDSPMRVQIIVAKLVSKMAELSYLAQEEFARENVTKPLVTCLSIDMVLDDPKLQLGKPSFHSVVEINKELAGKNLNTSLNSSSTSSHSDSSSRGGNQRKEKEVESSEVKLQLKVNCAEALWRLSKGSLMNSRKITETKGLLCLAKIIENEGGELQYNCLMTVMEVTAVAESKPDLRHAAFKITSPAPKAVLDQLSRMIHRDSDPVLQVPAIKSIGSLARIFPAKESQIINLLVLQMKSMDMDVAIEAVIALGKFACPENYNCVAHSKSLIEFGGVPPLMKLLKQNDQAQVPGLILLCYLALSVGNSKVLEQAHALNAMKGMARLVFSHPDLHELYAKAIHHLTLYQAGAHHIHRHSFSP* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5490262 5494538 - CsaV3_1G008790.1 Csa01g00879 515376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00879 615 MobiDBLite consensus disorder prediction 331 348 - -
Csa01g00879 615 PANTHER ARMADILLO REPEAT ONLY 1 PROTEIN 19 614 - -
Csa01g00879 615 SUPERFAMILY ARM repeat 179 580 IPR016024 -
Csa01g00879 615 Coils Coil 37 57 - -
Csa01g00879 615 Gene3D - 25 143 IPR036537 GO:0007166
Csa01g00879 615 Gene3D - 172 326 IPR011989 -
Csa01g00879 615 SMART arm_5 518 557 IPR000225 GO:0005515
Csa01g00879 615 SMART arm_5 194 235 IPR000225 GO:0005515
Csa01g00879 615 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 205 248 IPR000225 GO:0005515
Csa01g00879 615 MobiDBLite consensus disorder prediction 331 360 - -
Csa01g00879 615 PANTHER ARMADILLO REPEAT ONLY 4 19 614 - -
Csa01g00879 615 Gene3D - 346 609 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00879 - - - csv:101205472 1133.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00879 Csa01g00117 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00879 Csa-Chr1:5490262 Csa02g01370 Csa-Chr2:13152737 4.62E-111 dispersed
Csa01g00879 Csa-Chr1:5490262 Csa02g01772 Csa-Chr2:17219865 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g808 . . . . . . . Bma12g01051 . Cmo18g00148 Cma10g00100 Cma11g00072 Car10g00088 Car11g00064 . . Cpe04g01579 Bhi02g00507 Tan09g2296 . . Hepe09g0230 . . Cla06g01692 Cam06g1880 Cec06g1927 Cco06g1932 Clacu06g1836 Cmu06g1778 Cre06g2593 . . Cone13ag0162 . Lsi02g00406 Csa01g00879 Chy12g01244 Cme12g01667 . Blo15g00254 . . . . . . Sed01g1626 Cmo10g00103 Cmo11g00074 . Cma18g00187 . Car18g00179 Cpe09g01008 Cpe18g00864 Bhi08g01653 Tan05g1977 Cmetu12g1973 Lac10g0487 Hepe07g2202 . . Cla01g01326 Cam01g1402 Cec01g1434 Cco01g1489 Clacu01g1392 Cmu01g1300 Cre01g1240 Lsi06g01586 Csa01g00117 Chy02g02610 Cme02g02007
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013810 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00879 Csa_Chr01 FPKM 15.868805 16.776932 0.155236 1.429457 2.619824 1.82805 3.604928 11.175135 12.166347 11.327529