Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00881 ATGAGGTTGTATGTTTATGTATTGGAGGCTAAGGACCTTCATGTGAAGGATTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGGATTATGAGGAATTGCTCTAATCCTGTTTGGAATGAGGAGTTTATTTTCAAGTTTCGTGATGTCGATGATGAACTAGTTGTGTCTGTTTATGAGCACAATGATGAATCTAATTTCTTTCATGCTTCATCGGGTTTGATTGGTCGTGTTCGGATACCCATATGGACTGTTGCTGCTGAGGATTCACAGACCTTGCCGCCCACTTGGTTTGATCTGCGAAGGTCCAAAACTGAGAAATTTATCGATGAAGTTGCTGGGAAAGTGCTTCTTATTGTCTCATTACATGGAAAAGGCAATGTAATCAACCAATCAAGTGCTACTAATACTAATACTAATCCTAAACCTTTAGATTTGGTTGGCGCCAAATCTTCATCTAGCAAGGCTGTTAAATGGAAGCCTAACAAGAAAACTATTGTGAGTCGTTTGGAGAGGTTGTTTCATAAGAGTGATGAGGACACAAGAACAGATAATTCTTCAGAGTCATCAAGTGCCATGTCTGATACTGAAGAGCGCATTAATGGGCATCTGTCTGAATCTAGCTTTGATGAAGCTATTGAGACATTGCAGCTGAGGAGCAATGGAGAAGAAATGCCAGAAAATTTATCTGGCGGGGTTCTTGTGGATCAGGTATATGTAGTTTCACCAGGTGATTTGAACAGGCTTCTCTTTTCGACAGGTTCACAGTTCAGGAGAGAACTAGCAGAGCATCAGGGAATAACAAATTTAGAAGAAGGAACTTGGTCTTGGAAACGAGGGGATGTACCTTGTCTTTCACGGATTGTATCTTACCGAAAACCTGCAACTAAGGTTGTTGGAGCTATTAATGCTACGGAGGAACAAACCTACGTTAAAGGGGATGGATGGGAATTTGCTGTCTTGGTAAATGTAAATACACCCGAGGTACCATTTGGTAATGCATTCAATGTTGAGTTACTCTACAAGATAATGCCTGGCCCTGAGTTAATTTCTGGAGAAGAGACTTCCCATTTTGTAGTTTCTTGGGGTATGAACTTCCTCCATAGTACAATGATGAAAGGCATGATTGAGAAAGGGGCTCGTCAGGGGCTGGAGGAAAATTTTGTCCAGTTCACTAATCTGCTGGCTCAGCATCTTAAAAGTCCGAATTCTACTGAGTTATTGAACAAAGGTCACGTGTTGTCAGCTTCTGAGAATAACCGCCAATCAAATTTTGAATTGGCCCGCCAATACTTCTGGAATTTCACTGTACTTTCTACCTTGTTCGTCCTGGTATACGTACTTGTGCACATTATTCTTTCCAAGCCTAAAACAACGCAAGGCTTGGAGTTCATTGGAATGGATTTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAACGTGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAGGTGACCATGGAGTCAAAGGCCAAGGAGATGGATGGATCCTAACCATAGTTCTTTTAGAAGGAGTGAACATTTCATCCTTGGATTCTTCTGGATCCTCAGACCCTTGTGTGGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCTGTTGAGCTTCAAACTCATGAGCCTCAGTGGAACGAGATACTGGAGTTTGATGCCATGAAGGAACCACCATCAGTATTATATGTGGAGGTTTTCGACTTTGATGGTCCATTTGACCAGGCTACTTCACTCGGGCATGCAGAGATTAATTTCCTAAAATATAAATCAACTGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAATCTTCCCAGTCGAAGCTACACTTAAGAATCTTCTTAGAAAATACTGATGGAATTGAAACAATAAGACAATACTTGTCTATGAAGGGAAAGGAGGTTGGTAAGAAGCTGCATCCTAGGTCACCTTATAGGAACTCAACATTTCAAAAACTTTTCGGTTTGCCAGCAGAAGAGTTTCTTGTCAGCGACTTCACATGCTCCTTGAAAAGAAAAATGCTTCTTCAGGGGAGATTATTTCTATCTGCCAGAGTCATTGGGTTTTACGCCAACTTTTTTGGACAGAAAACAAAGTTTTTCTTTCTCTGGGAGGACATTGAAGATATACAAGTACTGCACCCCTCCCTTTCCTCTCTAGGTAGCCCATCATTAGTCATAATTCTTAAAAAAGGTCGAGGTCTTGAAGCAAGTCACGGTGCAAAGTCTCAAGATGAAGAGGGTAGACTAAGATTTTACCTCCAATCATTTGTCTCATTCAATGTAGCCAGCAGGACGATTATAGGTATGTGGAGAACAAGGACATCGACCCTTGATCAGAAAGCACAGGTTGCTGAAATGTCAAATGATTCCGAAGAAAGATAA 2457 41.23 MRLYVYVLEAKDLHVKDSFVKLRVGRRKAKTRIMRNCSNPVWNEEFIFKFRDVDDELVVSVYEHNDESNFFHASSGLIGRVRIPIWTVAAEDSQTLPPTWFDLRRSKTEKFIDEVAGKVLLIVSLHGKGNVINQSSATNTNTNPKPLDLVGAKSSSSKAVKWKPNKKTIVSRLERLFHKSDEDTRTDNSSESSSAMSDTEERINGHLSESSFDEAIETLQLRSNGEEMPENLSGGVLVDQVYVVSPGDLNRLLFSTGSQFRRELAEHQGITNLEEGTWSWKRGDVPCLSRIVSYRKPATKVVGAINATEEQTYVKGDGWEFAVLVNVNTPEVPFGNAFNVELLYKIMPGPELISGEETSHFVVSWGMNFLHSTMMKGMIEKGARQGLEENFVQFTNLLAQHLKSPNSTELLNKGHVLSASENNRQSNFELARQYFWNFTVLSTLFVLVYVLVHIILSKPKTTQGLEFIGMDLPDSLGELVTSGILVLQLERVYNMVSHFIQARLKRGGDHGVKGQGDGWILTIVLLEGVNISSLDSSGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEILEFDAMKEPPSVLYVEVFDFDGPFDQATSLGHAEINFLKYKSTELADIWVPLEGKLAQSSQSKLHLRIFLENTDGIETIRQYLSMKGKEVGKKLHPRSPYRNSTFQKLFGLPAEEFLVSDFTCSLKRKMLLQGRLFLSARVIGFYANFFGQKTKFFFLWEDIEDIQVLHPSLSSLGSPSLVIILKKGRGLEASHGAKSQDEEGRLRFYLQSFVSFNVASRTIIGMWRTRTSTLDQKAQVAEMSNDSEER* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5498721 5506226 + CsaV3_1G008820.1 Csa01g00881 515378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00881 818 Pfam GRAM domain 673 744 IPR004182 -
Csa01g00881 818 CDD C2 521 621 - -
Csa01g00881 818 PANTHER BNAA05G37250D PROTEIN 1 817 IPR044511 -
Csa01g00881 818 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 519 643 IPR035892 -
Csa01g00881 818 Gene3D C2 domain 509 640 IPR035892 -
Csa01g00881 818 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 1 817 - -
Csa01g00881 818 ProSiteProfiles VASt domain profile. 233 406 IPR031968 -
Csa01g00881 818 MobiDBLite consensus disorder prediction 180 209 - -
Csa01g00881 818 CDD C2 3 103 - -
Csa01g00881 818 Gene3D C2 domain 1 126 IPR035892 -
Csa01g00881 818 ProSiteProfiles C2 domain profile. 506 619 IPR000008 -
Csa01g00881 818 Gene3D - 670 797 IPR011993 -
Csa01g00881 818 SMART gram2001c 672 738 IPR004182 -
Csa01g00881 818 Pfam C2 domain 2 103 IPR000008 -
Csa01g00881 818 Pfam C2 domain 519 621 IPR000008 -
Csa01g00881 818 SMART C2_3c 520 618 IPR000008 -
Csa01g00881 818 SMART C2_3c 2 97 IPR000008 -
Csa01g00881 818 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Csa01g00881 818 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 131 IPR035892 -
Csa01g00881 818 Pfam VAD1 Analog of StAR-related lipid transfer domain 237 386 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00881 - - - csv:101205709 1593.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00881 Csa-Chr1:5498721 Csa01g01522 Csa-Chr1:10892545 0 dispersed
Csa01g00881 Csa-Chr1:5498721 Csa01g00387 Csa-Chr1:2397832 3.02E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00881 Csa_Chr01 FPKM 24.014248 26.652315 33.611927 31.43577 62.253216 56.265903 64.703842 24.08506 24.049498 29.273085