Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00883 ATGGAGTCTACTATGGTGATTAAGGTTAGGTATGGAGATATGCTGAGACGCTTCAGTGTAAAAGTAGATGAAAACAATAGATTGGATCTTGACATCAACGGTTTGAGATCAAAAGTAGTTGATCTCTTCAGCTTCTCTTCTGATACTGATTTTATATTGACTTACGTTGATGACGATGGTGATGTTGTCACCCTCGTTAATGGTGATGATCTGGATGAAATGATGAGCCAACACTTGAGTTTCTTGAAAATTAATGTGCATTTGAGAAATAAGGAAAAAGGCCAATCTCATAATAAATCAGATGGAAGTTCTACCCGAATGACACCCGAAAGTTCATTTCAAAATGTTTTTCCTGGTATCTCCGAGGTTTTGAAATCTATGCCAGAGCCCTTGCCAGAATTTTGTTCACAGCTCCTCCTTGACATTGCTTCAAAAGCTGTTGCTAGTCCCGTGCTTTCTGAGCTTGCTCAAAGCTTTATTCGGTTGGGAAACCAAAACTCACACTCAAGTTCTCGGACCTCATCTGTTCCAGAGGTGAGCACACAGAATGTGGCCACTGAGTGTCCAACACCACCCCTAGGCGCAGATTCAAGAGCTTCAAAGAATGATGACTTTCACCAAGAAACTGGGTCAAAATTTCAATGCAGTGGTTTTTCTACTAAAAATAGGAAGATAATTAACAGTGAGAATGTGACAAAGAACACTGGTGAGCCTATTGCTTCTGGACTTTCCATTGGGAAACCAGCTATTGCTGCTCGTTCCAGCAGCTCTTTTGATGGAAAGGAAAAGGAAAAACGCAGTGATGCATTTCTTAAGCTTGGTAACTCACATTGTTCACCTGCAACTTCTGTTGATCGTAGGTTTATTAATGAGTGCCCTTTCAGTGGAATACCTTGGGCTCCTCAACCATATTCGAGAACTGCAGGTATAGAGCCAGTAAGTAGCAGCAGTGGTAACACTGAATCTGCAGGAAGTATGTTCCATAAAGGTCCAATAGTTAACAGCAGTGACTATGTTGGATCTGTGGGAAATATGTTCCATAAAGGTGTTATTTGTGATGGCTGTGGAGCCCGTCCAATTACTGGTCCGCGTTTCAAGTCCCGAGTGAAAGATAATTATGATCTCTGTAGCATCTGCTTTGCTAAAATGGGTAACGAGGCTGACTACATTAGGATCGATCGACCTGTCTCTTGCCGCTATCCAAGAATGAAAGCATTCAACCATAGATTTCCATTGTCTGGCCCTCGAATAATCGATCCTTTGAGAAGTTCTGTAAAGCAGACCAAGCTTGATAGTCACTTTGTAGCTGATGTTAATGTATTTGATGGCACTGTGATGACTCCACGTACCCCATTTACCAAGATATGGCGACTGCTTAATAGTGGGACTTCGAATTGGCCCCATGGTTCACAGCTAGTGTGGACTGGAGGACACAAGTTCAGCCATTCATTATCTGTTGAAATCGAGGTTCCTGAGGACGGACTTCCTCCGGGTCAGGAAATTGAAATTGCAGTTGACTTTACTACCCCTCCATTTTGTGGTCAATACACCTCGTACTGGAGTATGGCATCTCCATCTGGCCACAAATTTGGGCAACGTGTTTGGGTTCTTATTCAGGTTGATGAAGTACTTGGGATACCAGATTCCAATTATTCCCAAGCTTTGGACTTAAATTTACCCCCCATACCCATAAATCCTTCCCAAGAGGGTGTAGAAAAGAATTCAAAGACTCCTGCAGTTTCTGATGGTGTACTTTTCCCCCGTGATTCCATCCCCATCTTCGAACAAGTAAAACCTGATCATAGTCTGTCTCACCCGGATCTACAATTCCTCGTAGATGAGGGTATTCTAGTTGTTGAAGGCCCTGCTGCTACTTCTTCTAAGGATGATAATTTGGGTTCGTCCTGCTCTGCTGTCGACTGTCATGGAGTTCTACCAAGTTCAACCAATGTTCCCTCTAAGTCATGCCCTTTTATTGATTTTCCTGCACCAACTCCTCCTGCAAACCCATTTCCAACACCATCCCCCAAGCTTTCTCCCGCATCATCCGAACATGTCATTGCCAATAATGCCAATAATGGCAATAACGGCAATAACGGCAATAACTTGGTTGAAGAAACTCTTCTTAAAACACTCGAGGATATGGGATTCAAACAGGTTGATCTAAACAAGGAAGTACTAAAGAGGAACGAGTATGATCTAGGAAAGTCAGTGGATGAACTCTGCGGAGTTGCTGAATGGGATCCGATCCTTGATGAGTTGGAGGAAATGGGATTCAACGACAAGGAAATGAACAAAAGACTTCTGATGAAGAACAATGGCAGCATGAAGCAAGTAGTGATGGAACTTCTTTATGGGGAGAAGGCTTAG 2370 42.87 MESTMVIKVRYGDMLRRFSVKVDENNRLDLDINGLRSKVVDLFSFSSDTDFILTYVDDDGDVVTLVNGDDLDEMMSQHLSFLKINVHLRNKEKGQSHNKSDGSSTRMTPESSFQNVFPGISEVLKSMPEPLPEFCSQLLLDIASKAVASPVLSELAQSFIRLGNQNSHSSSRTSSVPEVSTQNVATECPTPPLGADSRASKNDDFHQETGSKFQCSGFSTKNRKIINSENVTKNTGEPIASGLSIGKPAIAARSSSSFDGKEKEKRSDAFLKLGNSHCSPATSVDRRFINECPFSGIPWAPQPYSRTAGIEPVSSSSGNTESAGSMFHKGPIVNSSDYVGSVGNMFHKGVICDGCGARPITGPRFKSRVKDNYDLCSICFAKMGNEADYIRIDRPVSCRYPRMKAFNHRFPLSGPRIIDPLRSSVKQTKLDSHFVADVNVFDGTVMTPRTPFTKIWRLLNSGTSNWPHGSQLVWTGGHKFSHSLSVEIEVPEDGLPPGQEIEIAVDFTTPPFCGQYTSYWSMASPSGHKFGQRVWVLIQVDEVLGIPDSNYSQALDLNLPPIPINPSQEGVEKNSKTPAVSDGVLFPRDSIPIFEQVKPDHSLSHPDLQFLVDEGILVVEGPAATSSKDDNLGSSCSAVDCHGVLPSSTNVPSKSCPFIDFPAPTPPANPFPTPSPKLSPASSEHVIANNANNGNNGNNGNNLVEETLLKTLEDMGFKQVDLNKEVLKRNEYDLGKSVDELCGVAEWDPILDELEEMGFNDKEMNKRLLMKNNGSMKQVVMELLYGEKA* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5507175 5511714 + CsaV3_1G008830.1 Csa01g00883 515380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00883 789 CDD NBR1_like 428 541 IPR032350 -
Csa01g00883 789 Gene3D - 697 745 - -
Csa01g00883 789 MobiDBLite consensus disorder prediction 165 211 - -
Csa01g00883 789 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 196 787 - -
Csa01g00883 789 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 184 - -
Csa01g00883 789 SMART PB1_new 4 89 IPR000270 GO:0005515
Csa01g00883 789 Pfam Ig-like domain from next to BRCA1 gene 439 540 IPR032350 -
Csa01g00883 789 CDD UBA_NBR1 704 742 - -
Csa01g00883 789 Gene3D - 341 397 IPR043145 -
Csa01g00883 789 Pfam Zinc finger, ZZ type 347 382 IPR000433 GO:0008270
Csa01g00883 789 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 737 786 IPR015940 -
Csa01g00883 789 Pfam PB1 domain 5 87 IPR000270 GO:0005515
Csa01g00883 789 MobiDBLite consensus disorder prediction 91 112 - -
Csa01g00883 789 PANTHER PROTEIN JOKA2 196 787 - -
Csa01g00883 789 PANTHER PROTEIN JOKA2 1 184 - -
Csa01g00883 789 SUPERFAMILY CAD & PB1 domains 1 87 - -
Csa01g00883 789 Gene3D Immunoglobulins 424 543 IPR013783 -
Csa01g00883 789 SUPERFAMILY RING/U-box 344 397 - -
Csa01g00883 789 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Csa01g00883 789 ProSiteProfiles Zinc finger ZZ-type profile. 347 397 IPR000433 GO:0008270
Csa01g00883 789 MobiDBLite consensus disorder prediction 165 188 - -
Csa01g00883 789 Gene3D - 746 786 - -
Csa01g00883 789 SMART zz_5 346 391 IPR000433 GO:0008270
Csa01g00883 789 CDD UBA_NBR1 746 784 - -
Csa01g00883 789 SUPERFAMILY UBA-like 747 784 IPR009060 GO:0005515
Csa01g00883 789 Gene3D - 1 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00883 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 1545.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00883 Csa_Chr01 FPKM 61.688751 71.089943 56.101799 47.748398 74.631996 69.333992 72.294739 8.090753 6.645046 6.139558