Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00885 ATGAGTGCTCCCATGGAGATTTCTTTCCCAAACCCTCCCTTAGAAGCCCAGATGTCTGAATCAAATGGCATCAGCTCCGAGTCAGCTGCTTCTTCTATTGTAAATGAAGACAAAATTCTCGTTTCAGTCGAGGTGTGCTTAAAATCCTCCAGCACTGCTCGGATTGAAGATGTTCGGTTGGCCGTTGAGAGAATGCTTGAGAAGAGAAGTTTAAGCTATGTTGATGGGCCTATTCCAGTGCCGCTTGATGACGCTTTTCTCACAGAAAACGTGCATGGAATCCGAATTTGCGACTCTGACGACGGCGTGCAAAGCCATGACATTCTCTTGTTCTGGCAAGTCAAACCTGTTGTTCATGTCTTTCAGCTTTCTGAAGAAGGACCCTGCGAGGAACTTGGTGGGGAAGGACAGATTTCTAGTTTTAATGAATGGATACTTCCTGCCAAGGAGTTTGACGGGATATGGGAAAGTTTAATTTTTGAGTCTGGTCTCAAGCAAAGGCTTCTTCGATATGCTGCTAGTGCTTTGTTATTCACTGAAAAGGGTGTCGATCCATTCCTAGTTTCATGGAATCGGATTGTCCTATTACATGGACCTCCAGGAACTGGTAAGACCTCTTTATGCAAAGCACTGGCTCAAAAACTGTCGATAAGATATTTGTCGAGATACCCACACAGCGTACTCATTGAAGTTAATGCACATTCACTGTTTAGCAAATGGTTTTCTGAAAGTGGCAAGCTGGTAGCAAAGCTATTCCAGAAGATTCAAGAGATGATAGAGGAAGAAGACAATCTGGTATTTGTTTTGATTGATGAAGTGGAAAGCTTAGCTGCTGCTAGAAAGGCTGCTTTGTCTGGTTCAGAACCTTCAGATTCCATTAGGGTTGTCAATGCGCTACTTACACAGATAGACAAGTTGAAATCGTCACCAAATGTAGTGATTCTGACAACTTCCAATATAACAGCAGCTATTGATATTGCATTTGTGGATCGAGCAGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCACGTTATGAAATCCTAAGGTCCTGCTTGCAAGAGCTTATACGCACTGGAATTTTGTCAACTTCTGAGGGTTGTGACCACTCTATGCTTCCTAACTATGCTGGTTTGAAAGAGAAAGTAAACATTCCAGAGACTGAGAAGGTTGATGTACCGCTTCACATCAGCAAACTATTGCTTAAGGTTGCTGAAGCATGCGAGGGTTGTAGCGGACGTTTCTTAAGAAAGCTCCCATTCTTAGCGCACGCGACTCTAGCCAATCCATGTACTGGCGATCCTTCAAAGTTCTTGTTCGCAATGTTGGAAACGGCCAGGAGGGACCGAACAGAGTTACCTGAATGA 1371 43.69 MSAPMEISFPNPPLEAQMSESNGISSESAASSIVNEDKILVSVEVCLKSSSTARIEDVRLAVERMLEKRSLSYVDGPIPVPLDDAFLTENVHGIRICDSDDGVQSHDILLFWQVKPVVHVFQLSEEGPCEELGGEGQISSFNEWILPAKEFDGIWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRYLSRYPHSVLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEEDNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQIDKLKSSPNVVILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILSTSEGCDHSMLPNYAGLKEKVNIPETEKVDVPLHISKLLLKVAEACEGCSGRFLRKLPFLAHATLANPCTGDPSKFLFAMLETARRDRTELPE* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5513946 5519350 + CsaV3_1G008850.1 Csa01g00885 515382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00885 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Csa01g00885 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Csa01g00885 456 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Csa01g00885 456 SMART AAA_5 190 342 IPR003593 -
Csa01g00885 456 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Csa01g00885 456 Gene3D - 140 357 IPR027417 -
Csa01g00885 456 MobiDBLite consensus disorder prediction 1 22 - -
Csa01g00885 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 426 IPR027417 -
Csa01g00885 456 CDD AAA 192 340 - -
Csa01g00885 456 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 33 452 IPR044539 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00885 K22399 TRIP13; pachytene checkpoint protein 2 - csv:101207135 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00885 Csa-Chr1:5513946 Csa06g01309 Csa-Chr6:10947557 2.82E-16 dispersed
Csa01g00885 Csa-Chr1:5513946 Csa06g02599 Csa-Chr6:22912639 8.28E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g830 . . . . . . . . Cmo13g00891 . . . . . . Cpe20g00264 . . . . . . . . . . . . . . . . . Cone13ag0175 . Lsi02g00414 Csa01g00885 Chy12g01238 Cme12g01661 . . . . . . . . . . . Cma13g00860 . Car13g00702 . . . Bhi08g01662 Tan05g1968 Cmetu12g1001 Lac10g0493 Hepe07g2197 . . Cla03g00289 Cam03g0307 Cec03g0301 Cco03g0315 Clacu03g0308 Cmu03g0918 Cre03g0609 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012252 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00885 Csa_Chr01 FPKM 0.0 0.20197 0.0 0.0 3.544705 3.531155 3.386783 0.0 0.0 0.0