Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00886 ATGGAGTTCAATTTTTGGGCCTCAAGAGTTCATCCTACTGACCAACTTTCCGCTGTTCAAGCTGCCATGCTTCATTCTGATGGAGAAGATGATTCACGACCTTACTTTTCATGCCCTTACTGTTATGTGGATATTGAAGTTCAAGTACTTTGTAGCCATTTGCAAGACGAGCACTGCTTTGACTTCAGAAATGCAGTTTGTCCTCTATGTGCAGCCAGTCTAGGAAAAGATGTAATTGGGCATTTTACAGCACAACATTCAAGCTCAATAAAGAGGAGGAAAAAACCTGAGAAATCTGTTTCTTCTGGCTTTAATTCAAAGAAAGTGATAACAAAGGGCAGGGAAAAAAGAAATGGATCTGCACCTGATCCCCTTCTACCTTTTATCTGCAGCATTCCTTTCTCAGACCATGAATCTGGCGAGAGAGACGACCGCTCAGAAAACGATGCGTCCGTCGCAGTGAACATCAAAAGTAATAGTTCACAGTTGCTGGAAAGAAACCAGAACAGTGAAGAGTTGAATCGGAGAGCATCTTTTGTACAACAATTAATCACATCAACCATTTTTTAG 570 41.23 MEFNFWASRVHPTDQLSAVQAAMLHSDGEDDSRPYFSCPYCYVDIEVQVLCSHLQDEHCFDFRNAVCPLCAASLGKDVIGHFTAQHSSSIKRRKKPEKSVSSGFNSKKVITKGREKRNGSAPDPLLPFICSIPFSDHESGERDDRSENDASVAVNIKSNSSQLLERNQNSEELNRRASFVQQLITSTIF* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5523550 5526665 + CsaV3_1G008860.1 Csa01g00886 515383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00886 189 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 189 IPR033347 -
Csa01g00886 189 PANTHER PROTEIN DEHYDRATION-INDUCED 19 HOMOLOG 5 1 189 - -
Csa01g00886 189 MobiDBLite consensus disorder prediction 88 124 - -
Csa01g00886 189 Pfam Drought induced 19 protein (Di19), zinc-binding 36 87 IPR008598 -
Csa01g00886 189 Pfam Stress-induced protein Di19, C-terminal 116 188 IPR027935 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00886 - - - csv:101207377 387.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00886 Csa-Chr1:5523550 Csa01g02733 Csa-Chr1:24224715 2.57E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g833 Blo04g00718 . . . . . . . Cmo13g00888 Cmo18g00154 . . . . . Cpe20g00265 . . . . . . . . . . . . . . . . . Cone13ag0177 Cone19ag0170 . Csa01g00886 Chy12g01236 Cme12g01659 . . . . . . Bma03g00767 . . . . Cma13g00859 Cma18g00192 Car13g00700 Car18g00186 Cpe09g01002 . Bhi08g01664 . . Lac10g0495 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008892 2 2 1 2 1 1 2 0 1 1 0 1 2 1 1 2 1 2 2 0 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00886 Csa_Chr01 FPKM 0.0 0.273354 34.540283 36.886875 0.90328 0.41212 0.903737 1551.664673 1651.047119 1421.030518