Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00887 ATGTCTCAGGATTTGTCACCAGATCAAGACCTGGATGAATCTGATCCCGAGTTTGTTGAGATTGATCCTACTGGTCGATATGGAAGGTATAAGGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATATCGAGCTTTTGATGAGTTGGAAGGAATCGAAGTAGCTTGGAATCAGGTTAAGGTGACAGATCTATTGCGAAACTCTGAAGATTTGGAGCGGCTTTATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACAAAAAATGAAAACATTAACTTCATTACTGAGATATTCACCTCTGGAACACTAAGACAATATAGAAAGAAACACAAGCATGTTGATGTGAGAGCATTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTCTATCTTCATAGTCACGACCCTCCAGTTATACATAGGGATTTAAAATGTGACAATATCTTTGTAAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTGGGACTTGCTGCCATTCTTCAACAAGCTCGTTCAGCCCACAGTGTCATTGGGACACCTGAATTTATGGCTCCGGAGTTGTATGAGGAGGAATACAATGAACTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTAACATTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATTAAACCAGCTTCGTTGGCAAAAGTCACTAACTTAGGAGTGAGAGCATTTATAGAAAAATGCATCGCAAATGTCTCTGATCGCTTACCAGCAAAAGATCTTTTAAGGGATCCATTTCTCCAAGCAGATGATGATCATGAAAGTATATCTCGTCATTTACGATCAAAGACTCAACCTACAGAAAAAAAAGAGCAAATTGATTTCGATCGAAGTGTAGATTATTCTCCGGCTGAGACTAGTAGAGATTTCAGTATGCATGGCGAGAGAAAAGATGTTAATAAGATATTTCTCAAACTACGAATTGCAGATTCTATGGGTAATTTTCGCAATATCCATTTCCCGTTTGATATTGAAGCCGACACAGCAATTTCTGTTGCCAGCGAAATGGTCGAGGAGTTGGATCTTTCTGATCAAGATGTCTCCACAATTTCTGAAATGATTGAAACAGAAATTCGATCATACATTCCAGATTGGATATCGGTTGAGTATTCTGGAGATAATGTTGGAGCTGATGCTCCAGTTTCTGATAGCTCTCCATCTGAAACGAGAAACGTTGCATCTCCGTTGTCTATTGAATCTGGTAACCTTGCATTAGAGGTAATGCCTTCAGGCCGCAAGTATTGGTCAGACTCTCCAAAAGGAATTGGTGGATGTTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTTTTGCCTCAGATCAGAATGTTGAATCCTCTAACAGCCACATACATGGGGACAATCTAGATCATGCTGCTATAATCAAGGGACTGGAAAATGAGCTTTTGTCGGAGGGTGGTGATCATGATGGGCAAGATGAGAGTAGCATTCATACTAGCTCTGAGACACATCATTCGGAAGAGAACAATTATGATGAATCAGTTGATCTCAAAATAGTAGCTGAGAAACTTGAAAATTTGTTGACACAACAACAAAAAGAATTAGATGAACTAAGGAAAAAACATAAATTGGATATTTCAGAACTTTTGACTAAACTCACACCTGAATCCTATCAGAAAGTTATAGAGATGTGTCAGCTACAGCATCCTGATTTTGAGTTGGTTCTCTAA 1806 38.93 MSQDLSPDQDLDESDPEFVEIDPTGRYGRYKEILGKGAFKRVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDVRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTNLGVRAFIEKCIANVSDRLPAKDLLRDPFLQADDDHESISRHLRSKTQPTEKKEQIDFDRSVDYSPAETSRDFSMHGERKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGRKYWSDSPKGIGGCSPIKPGPSNLSFASDQNVESSNSHIHGDNLDHAAIIKGLENELLSEGGDHDGQDESSIHTSSETHHSEENNYDESVDLKIVAEKLENLLTQQQKELDELRKKHKLDISELLTKLTPESYQKVIEMCQLQHPDFELVL* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5525442 5530552 - CsaV3_1G008870.1 Csa01g00887 515384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00887 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Csa01g00887 601 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00887 601 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Csa01g00887 601 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00887 601 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 595 - -
Csa01g00887 601 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Csa01g00887 601 MobiDBLite consensus disorder prediction 508 536 - -
Csa01g00887 601 Gene3D - 339 404 - -
Csa01g00887 601 Coils Coil 539 566 - -
Csa01g00887 601 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00887 601 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674|GO:0005524
Csa01g00887 601 CDD STKc_WNK 26 286 - -
Csa01g00887 601 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 5 595 - -
Csa01g00887 601 Gene3D Transferase(Phosphotransferase) domain 1 111 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00887 Csa-Chr1:5525442 Csa07g01167 Csa-Chr7:11442874 2.41E-177 dispersed
Csa01g00887 Csa-Chr1:5525442 Csa03g00442 Csa-Chr3:3747292 1.45E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77768 PF00069 Pkinase 2.20E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00887 K08867 - csv:101206177 1192.56