Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00893 ATGAACTTCTCTGCGATTAAGACAAGTAGAGCTACCCCTTCTTCTGTTGTATCTCTTTGCTGGAAACCTAATTCTAAGTGTACCCATGTTAAGTTTCGCACTCAAAAGGCTCCTATTCCGTTCTTCGACACTCTTAGATGTGTTCAATCGCCTCAATCCAGTACCCCAAGTCACAACTCTCGATTCTCATGCTCTGCTGCTACCCTCTCTCCCTCTTCTATTACCGAGCTCGTCTCTTTTAGGCTTCAGCGTCTGATTGATGAGTTCGAGTCCATATCCGAGCCGGTTGATAGAGTGAAGCGGTTGTTAAGGTATGCGAGTTTTCTTCCTCCTTTAGATGCCTCTGCGAGACTTGACTCGAATCGGGTCATGGGGTGTACGGCGCAGGTGTGGTTGGAGGTGCGGATTGATCAAGAGGGCAAGATGAGGTTTGCTGCGGATAGTGATTCGGAGATCTCTAAAGGGTTTTGTTCGTGTTTAGTTTCGGTGCTTGATGGTGCGATGCCTGAGGATGTTCTGCGGTTAAAAACAGAAGATTTGGCTGCTTTGAATGTGGGATTAACGGGTGGAGAACGATCGAGAGTGAATACTTGGTACAATGTTTTGATTAGTATGCAAAAGAAAACAAAGGCTTTGATTGCTGAGCTTGAAGGGAAATCGCCATTTGAGCCGTTTCCATCTTTGGTTGTGACTGCTGATGGAATTCATGCTAAAGGAAGCTATGCCGAAGCTCAGGCAAGATATTTGTTTCCAAATGATTCTACGGTGAAAGAGCTTGTCAAAGTGCTGAAGGAAAAAAAGATTGGCGTTGTTGCACATTTTTACATGGATCCTGAAGTCCAAGGGGTGTTAACTGCTGCCCAGAAGGAATGGCCCCACATTTATATATCTGATTCATTGGTAATGGCAGATATGGCTGTCAAGATGGCTAAAGATGGATGCCAATTTGTAACAGTACTTGGTGTAGATTTTATGTCAGAAAATGTGCGTGCAATTCTTGATCAAGCTGGCTTTGGAGAGGTAGGTGTGTACAGAATGTCTGATGAACTGATCAGTTGTTCTTTGGCCGATGCTGCAGCTACTCCTTCCTATATGAATTATCTTGAAATGGCTTCAAAGGATTATCCCTCCTTGCATGTTATCTATATAAATACGTCATTAGAAACTAAAGCCTACGCTCATGAGCTTGTTCCAACAATTACCTGTACTTCTTCAAATGTAATGCCAACAATTTTGCAGGCTTTTGCTCAAGTACCAGAATTAAATGTTTGGTATGGGCCGGATTCCTACATGGGTGCAAATATAGTAGAGCTGTTACAGCAGATGACCAAGATGACAGATGAAGAAATTGCAAAAATTCATCCAAAACATAACAGGGACTCAATTAGATCATTGCTCCCTCGTCTGCACTATTATCAGGAAGGTACGTGCATTGTACATCATCTTTTCGGGCATGAAGTCGTGGAGAAGATAAATGAAATGTATTGTGATGCATTTCTTACTGCTCACTTTGAAGTCCCCGGAGAAATGTTTGCTTTAGCGATGGAAGCAAAAAGAAGAGGAATGGGAATTGTAGGTTCCACCCAGAATATATTAGATTTCATAAAACAAAGGGTGCAAGAAGCTTTAGACAGAAATGTAAATGAACATTTACAATTCGTGTTGGGAACAGAATCTGGAATGATAACTTCAATTGTGGCAGCCGTTCGTAATTTATTAAATTCTGCAAAATCCACTTCTGGTGGAGCAAAGATCAATGTGGAGATTGTCTTTCCCGTGTCTTCAGATTCATTGACAAAAACGTCATCAAGTTCATCCCCAGGCCAAAAGTCGGTTGTACTTGGTGAGATCAATTTACCTGTAGTTCCTGGAGTTTCCAGTGGGGAGGGATGTTCTCTTCACGGTGGCTGTGCATCATGTCCATACATGAAGATGAATTCTCTCAGCTCTCTCATGAAAGTTTGTCACGAACTACCCAATAACAAAAGCGCAATATCATCTTATGAAGCCAAGAGATTCAAACTACACACAGTAACTGGAAAATCAGTTGCAGATATTGGTTGCGAACCAATCTTGCACATGAGAGATTTCCAGGCTGCAAAACATCTGTCAGAGAAACTTGTTCATCAGATAGCTAAACGGCATTAG 2148 42.13 MNFSAIKTSRATPSSVVSLCWKPNSKCTHVKFRTQKAPIPFFDTLRCVQSPQSSTPSHNSRFSCSAATLSPSSITELVSFRLQRLIDEFESISEPVDRVKRLLRYASFLPPLDASARLDSNRVMGCTAQVWLEVRIDQEGKMRFAADSDSEISKGFCSCLVSVLDGAMPEDVLRLKTEDLAALNVGLTGGERSRVNTWYNVLISMQKKTKALIAELEGKSPFEPFPSLVVTADGIHAKGSYAEAQARYLFPNDSTVKELVKVLKEKKIGVVAHFYMDPEVQGVLTAAQKEWPHIYISDSLVMADMAVKMAKDGCQFVTVLGVDFMSENVRAILDQAGFGEVGVYRMSDELISCSLADAAATPSYMNYLEMASKDYPSLHVIYINTSLETKAYAHELVPTITCTSSNVMPTILQAFAQVPELNVWYGPDSYMGANIVELLQQMTKMTDEEIAKIHPKHNRDSIRSLLPRLHYYQEGTCIVHHLFGHEVVEKINEMYCDAFLTAHFEVPGEMFALAMEAKRRGMGIVGSTQNILDFIKQRVQEALDRNVNEHLQFVLGTESGMITSIVAAVRNLLNSAKSTSGGAKINVEIVFPVSSDSLTKTSSSSSPGQKSVVLGEINLPVVPGVSSGEGCSLHGGCASCPYMKMNSLSSLMKVCHELPNNKSAISSYEAKRFKLHTVTGKSVADIGCEPILHMRDFQAAKHLSEKLVHQIAKRH* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5547302 5553208 - CsaV3_1G008930.1 Csa01g00893 515390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00893 715 Pfam Fe-S metabolism associated domain 87 207 IPR003808 -
Csa01g00893 715 Gene3D - 78 214 - -
Csa01g00893 715 SUPERFAMILY NadA-like 255 660 IPR036094 GO:0008987|GO:0009435|GO:0051539
Csa01g00893 715 Gene3D - 251 360 IPR036094 GO:0008987|GO:0009435|GO:0051539
Csa01g00893 715 PANTHER QUINOLINATE SYNTHETASE A 224 711 IPR003473 GO:0008987|GO:0009435|GO:0051539
Csa01g00893 715 Gene3D - 477 573 IPR036094 GO:0008987|GO:0009435|GO:0051539
Csa01g00893 715 Gene3D - 361 449 IPR036094 GO:0008987|GO:0009435|GO:0051539
Csa01g00893 715 SUPERFAMILY SufE/NifU 80 211 - -
Csa01g00893 715 Pfam Quinolinate synthetase A protein 259 568 IPR003473 GO:0008987|GO:0009435|GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00893 K03517 nadA; quinolinate synthase [EC:2.5.1.72] - csv:101208114 1390.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01056 Csa-Chr7:10066838 Csa01g00893 Csa-Chr1:5547302 1.04E-18 transposed
Csa01g00893 Csa-Chr1:5547302 Csa02g01780 Csa-Chr2:17258032 8.18E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g849 Blo04g00713 . . . . . . . Cmo13g00792 Cmo18g00160 . . . . . Cpe20g00342 . . . . . . . . . . . . . . . Cone2ag0938 Cone16ag0065 . . Lsi02g00425 Csa01g00893 Chy12g01231 Cme12g01654 . . . . . Bpe15g00658 . . Sed08g2480 . . Cma13g00762 Cma18g00198 Car13g00614 Car18g00192 Cpe09g00995 . Bhi08g01671 Tan05g1952 Cmetu03g2261 Lac10g0501 Hepe07g2191 . . Cla03g00293 . Cec03g0306 Cco03g0319 . Cmu03g0922 Cre03g0613 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007550 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00893 Csa_Chr01 FPKM 8.794732 7.735295 24.754772 22.476665 39.274242 40.844597 49.80006 11.802575 10.350997 13.416614