Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00896 ATGTTTATAGGTGGAAGTGACACAACAGCAACAGGGTTGGAATGGACAATGACAGAGCTAATGAGAAAACCAAGAATCATGAAGAAAGTTCAAGAAGAAGTTAGAACAATAATTGGCAAAAAATCAAAGATAGAAGCAGAAGACATTCAAAAAATGGAATACATGCAATGTGTGATTAAAGAGTCTCTAAGGCTTCACCCACCCGTTCCTCTTTTAGTGCCAAGAGAAACAATGGCAGACGTTGAGATTGAAGGTTACTATATTCCGTCAAAAACAAGAGTGTTTGTGAATGCTTGGGCCATTCAAAGAGACCCTCAATTTTGGGTTAATCCAAATGAGTTCATTCCAGAGAGATTTATGGACAAAACTAATTCAGCTGATTATAAAGGTCAAAACTTTGAGTTCATTCCATTTGGTAGTGGAAGAAGGAAGTGTGCTGGATTGTCATTTGGGATTGCTTCTTTTGAATTTGCTTTGGCTAATATTCTCTGCTGGTTTGATTGGAAGCTTCCTGGTGGTTGTGAATCATTGGATATTGAAGAAGCTAATGGACTCACTGTTC 562 37.9 MFIGGSDTTATGLEWTMTELMRKPRIMKKVQEEVRTIIGKKSKIEAEDIQKMEYMQCVIKESLRLHPPVPLLVPRETMADVEIEGYYIPSKTRVFVNAWAIQRDPQFWVNPNEFIPERFMDKTNSADYKGQNFEFIPFGSGRRKCAGLSFGIASFEFALANILCWFDWKLPGGCESLDIEEANGLTVX 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5573334 5573895 - CsaV3_1G008960.1 Csa01g00896 515393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00896 188 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS P450 superfamily signature 136 145 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 Coils Coil 27 47 - -
Csa01g00896 188 Pfam Cytochrome P450 1 185 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 SUPERFAMILY Cytochrome P450 1 187 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PANTHER CYTOCHROME P450 71B11-RELATED 1 187 - -
Csa01g00896 188 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 138 147 IPR017972 GO:0005506|GO:0016705
Csa01g00896 188 Gene3D Cytochrome P450 1 188 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS E-class P450 group I signature 145 168 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS E-class P450 group I signature 135 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00896 188 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 1 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00896 Csa-Chr1:5573334 Csa01g00898 Csa-Chr1:5587227 3.74E-131 dispersed
Csa01g00895 Csa-Chr1:5561946 Csa01g00896 Csa-Chr1:5573334 2.27E-117 tandem
Csa01g00896 Csa-Chr1:5573334 Csa01g00897 Csa-Chr1:5582160 4.04E-86 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00896 K20617 - csv:116402776 382.489