Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00899 ATGTCCCGTCCACCTTTTTCTATAGACATGTTTGTAGGTGGAAGTGACACAACAGCAACAGGGTTGGAATGGACAATGACAGAGCTAATGAGAAAACCAAGAATCATGAAGAAAGTTCAAGAAGAAGTTAGAACAATAATTGGCAAAAAATCAAAGATAGAAGCAGAAGACATTAAAAAAATGGAATACATGCAATGTGTGATTAAAGAGTCTCTAAGGCTTCACCCACCCGTTCCTCTTTTAGTGCCAAGAGAAACAATGGCAGACGTTGAGATTGAAGGTTACTATATTCCGTCAAAAACAAGAGTGTTTGTGAATGCTTGGGCCATTCAAAGAGACCCTCAATTTTGGGATAATCCAAATGAGTTCATTCCAGAGAGATTTATGGACAAAACTAATTCAGCTGATTATAAAGGTCAAAACTTTGAGTTCATTCCATTTGGTAGTGGAAGAAGGAAGTGTCCTGGATTATCATTTGGGATTGCTTCGTTTGAATTTGCTTTGGCAAATATTCTCTACTGGTTTGATTGGAAGCTTCCTGATGGTTGTGAATCATTGGATGTTGAAGAAGCTAACGGACTCACTGTTCGTAAGAAAAAGCCACTCCATCTTAATCCCATACCTTATGTTGTGTCTAATTAA 642 37.85 MSRPPFSIDMFVGGSDTTATGLEWTMTELMRKPRIMKKVQEEVRTIIGKKSKIEAEDIKKMEYMQCVIKESLRLHPPVPLLVPRETMADVEIEGYYIPSKTRVFVNAWAIQRDPQFWDNPNEFIPERFMDKTNSADYKGQNFEFIPFGSGRRKCPGLSFGIASFEFALANILYWFDWKLPDGCESLDVEEANGLTVRKKKPLHLNPIPYVVSN* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5594026 5598212 - CsaV3_1G008990.1 Csa01g00899 515396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00899 213 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 147 156 IPR017972 GO:0005506|GO:0016705
Csa01g00899 213 SUPERFAMILY Cytochrome P450 8 208 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 Pfam Cytochrome P450 8 201 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PANTHER CYTOCHROME P450 71B11-RELATED 8 208 - -
Csa01g00899 213 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 8 208 - -
Csa01g00899 213 PRINTS E-class P450 group I signature 154 177 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS E-class P450 group I signature 65 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS E-class P450 group I signature 106 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS E-class P450 group I signature 144 154 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS E-class P450 group I signature 22 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS E-class P450 group I signature 2 19 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 Coils Coil 36 56 - -
Csa01g00899 213 PRINTS P450 superfamily signature 13 30 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS P450 superfamily signature 145 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 PRINTS P450 superfamily signature 66 77 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00899 213 Gene3D Cytochrome P450 6 207 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00899 Csa-Chr1:5594026 Csa01g00903 Csa-Chr1:5627169 2.19E-108 dispersed
Csa01g00898 Csa-Chr1:5587227 Csa01g00899 Csa-Chr1:5594026 3.81E-150 tandem
Csa01g00899 Csa-Chr1:5594026 Csa01g00900 Csa-Chr1:5600170 3.09E-91 tandem
Csa01g00899 Csa-Chr1:5594026 Csa05g02266 Csa-Chr5:25282348 6.11E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00899 K20617 - csv:101207136 422.165